Planococcus antarcticus: BBH88_10155
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Entry
BBH88_10155 CDS
T04428
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pana
Planococcus antarcticus
Pathway
pana03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pana00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBH88_10155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pana03019
]
BBH88_10155
03400 DNA repair and recombination proteins [BR:
pana03400
]
BBH88_10155
Enzymes [BR:
pana01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBH88_10155
Messenger RNA biogenesis [BR:
pana03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BBH88_10155
DNA repair and recombination proteins [BR:
pana03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BBH88_10155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
ANU10646
LinkDB
All DBs
Position
complement(2253146..2254573)
Genome browser
AA seq
475 aa
AA seq
DB search
MNLEKLLYSAYGFSSFRPGQREIIEQVLAGEDVIALLPTGMGKSICYQLPAKVLPDSILI
VSPLLSLMQDQVAQLKKMGEKSVVAINSFLKPEDKEKIWNTLSSYKYIFISPEMLVQPFV
KKKLQQIKISLLVADEAHCISQWGFDFRPDYLRISEVLPVLNFPQVLALTATATDKVTEE
IKKYLALKEPYVYSHPMDRKNIVFDLKKFDDSRDKIEFIKGFIRKFSGPGIIYAGTRKKS
QELSMLLTEQGISAAFYHGGMEHQDRVFVQQQFQNGELQWICSTNAFGMGVHIPNIRHVI
HFQLPTSIEGYVQEVGRAGRDGEPSLATLLYAQGDEALLESLVMDDLPTQHEIEAVYRYG
VAATHIIEQGIVRETAFRVVAYWMTQLPMEGVIKQMELLRNGKRLQVLKIRELIGLEGCL
RSYIIQCFDQQLVDKPENCCANDGIDYDVFEAFMHSKEKQITLEWQERLHVILPI
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgaatttagaaaaattactgtattctgcctacggattttcttcgtttcgcccaggacag
cgggaaatcatcgaacaggtattggctggtgaagatgtcattgcgctgctgccgactgga
atggggaaatcaatctgctatcagctgccagcgaaagttttgccggatagtattttgatc
gtttctcccttgttgtcattgatgcaggatcaagtggctcaattaaaaaaaatgggcgag
aagtcggttgtcgcgatcaactcatttctaaagccggaagataaagagaaaatttggaat
acactcagttcttataagtatatttttatttctccggaaatgctcgtccagccttttgtc
aaaaaaaaactgcaacagataaaaatatctttgctagttgctgatgaagcacattgcatt
tctcaatggggatttgatttcaggccggattaccttcggatttctgaggttttgcctgtt
ttgaacttccctcaggtgttggcattgactgcgactgcaacagataaggttactgaagaa
ataaaaaaataccttgcgctgaaggagccttatgtttatagccatcctatggatagaaaa
aatattgtttttgatctaaagaaatttgatgacagtcgagataaaattgagtttataaaa
ggatttattcgaaaattcagtggtcctggaattatttatgcgggtacaagaaaaaagtcc
caggaactctctatgcttttaacggagcaaggaatttcagcagcattttatcatggtgga
atggagcaccaggaccgtgtctttgtccagcaacaatttcagaatggagaattgcaatgg
atttgttcaacaaatgcctttggtatgggtgtgcatattccgaatattcgtcacgtcatc
cactttcaattgccgacttccatagaaggctatgtccaagaagtaggcagagcaggacgg
gatggtgaaccgtctttggctacgctgttgtatgcacaaggcgatgaggcgctgctcgaa
agcttggtgatggatgatttgccgacacaacatgaaatagaggcagtataccgttacggc
gttgctgcaacgcatatcattgagcaaggaatcgtaagagagacggcgtttcgagtagtt
gcttactggatgacacaattgcctatggaaggcgtcattaagcagatggagcttttaagg
aatggtaaaagactacaagtattaaaaattcgtgaattaattggactcgaaggatgtctt
cgcagttatattattcaatgctttgatcagcagcttgtagacaaacctgaaaactgttgt
gctaacgatgggattgattatgacgtttttgaagcttttatgcactcaaaagaaaagcag
ataacacttgagtggcaagagcgtttgcatgtaatattacccatataa
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