Planococcus antarcticus: BBH88_10590
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Entry
BBH88_10590 CDS
T04428
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pana
Planococcus antarcticus
Brite
KEGG Orthology (KO) [BR:
pana00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pana03016
]
BBH88_10590
Enzymes [BR:
pana01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BBH88_10590
Transfer RNA biogenesis [BR:
pana03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BBH88_10590
Prokaryotic type
tRNA splicing ligases
BBH88_10590
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Phosducin
Motif
Other DBs
NCBI-ProteinID:
ANU12215
UniProt:
A0ABM6D9V6
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All DBs
Position
2167035..2168186
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AA seq
383 aa
AA seq
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MTVSQIEGFMNEELTANARVRIMPDCHAGKGAVIGTTMKVNDRVVPNLVGVDIGCGMLCV
EIQKQEVDFVKLDAAVATLVPSGQSIRTVAHDFTENIALDRVLANFSKDVAIHSLGTLGG
GNHFIEMNRAEDGRLFLVIHSGSRHLGVKVANFHQKKAIESLSNDKQGLDELIAQLKMQD
RHKEISDAIKSYKSLQPIIPNELAYLEGSLMQDYFNDLKIAQEYAKWNRSAMVQVLLEAM
EFNEVGRIDTVHNYIDLEHMILRKGAISARKDEMVLIPINMRDGSLLAKGKGNNDWNQSG
PHGAGRILSRTKAKQLLQLNDFTDTMKNVYTTSVNQDTIDESPFAYKTMQEIIDNTKETI
EIQSILKPIYNFKAAEFQGWRKK
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgactgtgtctcaaattgaggggtttatgaatgaagaattgacggcaaacgcacgggtg
cgtatcatgcctgattgtcacgcgggtaaaggagcggtcatcggcacaactatgaaagtg
aatgatcgcgttgtcccaaatttagtcggagtggatattggctgtggcatgctgtgtgta
gaaattcagaagcaagaagttgattttgtaaaacttgatgcagcggttgctacattagtt
ccttctggtcaatccattcgaacggttgcacacgatttcacggaaaatatagcactggac
cgtgtattagccaatttttcaaaagatgtggcaatccattctcttggcactctcggtgga
ggtaaccattttatcgaaatgaatagagcagaagatggtcggttatttttagttatccat
agcggaagtcgtcatttgggcgtcaaagtagcaaatttccatcaaaagaaagccattgag
agcttaagcaatgacaaacaaggacttgatgaactgattgctcaattgaagatgcaggac
cgacataaagaaataagcgacgccattaaatcctataaatcactacaacctattattcca
aatgaactcgcttacttggaaggttcgctcatgcaggattactttaatgatttgaagatt
gctcaggaatatgcaaaatggaaccgttcggccatggtgcaagttctcttagaagcaatg
gaatttaacgaagtcggccggatcgatacggtgcataattatattgatttagagcatatg
attttgcgaaaaggtgcgatatcagcgagaaaagacgaaatggtgttaattcccatcaat
atgcgcgacggctccctccttgctaaaggcaaaggcaacaacgattggaatcagtcggga
cctcacggagctggccgtattctttcgagaacgaaagcaaaacaacttcttcagttgaac
gattttacagatacaatgaagaacgtctacacaacgagcgttaatcaagacacgattgac
gaatctccattcgcttataaaaccatgcaagaaattattgacaatacgaaagaaaccatt
gaaatacagtctattttgaaacctatctataatttcaaagcggccgaattccaaggctgg
agaaaaaaataa
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