Planococcus antarcticus: BBH88_13240
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Entry
BBH88_13240 CDS
T04428
Name
(GenBank) DEAD/DEAH box helicase
KO
K18692
ATP-dependent RNA helicase CshB [EC:
5.6.2.7
]
Organism
pana
Planococcus antarcticus
Brite
KEGG Orthology (KO) [BR:
pana00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pana03019
]
BBH88_13240
03009 Ribosome biogenesis [BR:
pana03009
]
BBH88_13240
Enzymes [BR:
pana01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BBH88_13240
Messenger RNA biogenesis [BR:
pana03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BBH88_13240
Ribosome biogenesis [BR:
pana03009
]
Prokaryotic type
rRNA helicases
BBH88_13240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ANU11192
UniProt:
A0A1C7DIF9
LinkDB
All DBs
Position
1654539..1655831
Genome browser
AA seq
430 aa
AA seq
DB search
MTKFNEYPFKPFLLEAVEKLGFIEPTPIQKEMMPHILKGSSAIGQSHTGTGKTHSFIIPI
VERIDVSKQEVQAVIAAPTRELGTQIYNELQKLVVGSGIEVKSFIGGTDKQRSINKLKTQ
PHIVIGTPGRLRDLVKENALLVHTGKILVVDEADLAFDLGFIEEIDQVAGKMQDKLEMYV
FSATIPEKLKPFLKKYMESPVHVKIGDKRPTADGLDFYLVPVRSKKKMERLQDVMKVINP
YLAIIFVNTRTNADYVADQLAKEGIRVGRVHGDLAPRERVKMMRQIRDLEYQYIVATDLA
ARGIDIQGVSHVINYELPEDLEFFIHRVGRTARAGMKGLAITLFKPEEDDAIVRIEKMGI
PFQQKDIIKGEFVDLKERHSRTTRTKKANEIDAKAKTMVHKPKKVRPMYKKKMKWKMDEI
KKAERRKNRK
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaattcaacgaatatccatttaaacccttcctattggaagcggtagaaaaactc
gggtttatagaaccgacaccaatccaaaaggaaatgatgccccatatattgaaaggctca
agtgccattggccaatcccatacagggactggaaaaacacatagtttcataatcccgatt
gttgaacgcatcgacgttagcaaacaagaagtgcaggcggtaatcgcagcaccgacgcgt
gaacttggaacacagatttataatgagttgcaaaaactggttgttggatctggcattgaa
gtgaaatcgtttatcggtggaacagacaagcagcgttcaatcaataaattgaaaacacag
ccgcatatcgtaatcgggacaccgggtcgtttaagagaccttgttaaagaaaatgcttta
ttggtacacacagggaaaattcttgtggtagatgaagctgatttggctttcgacttaggt
tttattgaagaaatcgaccaagtagctggcaaaatgcaagacaaattggagatgtatgtc
ttttcagcgactattcctgaaaaattaaaacctttcctgaaaaagtacatggaatcacca
gtgcatgtgaaaatcggggataaacgcccaactgcagatggcctggacttttaccttgta
ccagtccgcagtaaaaagaaaatggagcgcctgcaggatgttatgaaagtcatcaatccc
tatttggcaattattttcgtcaatacccgcacgaatgccgattatgtcgctgaccaattg
gcgaaagaaggcattcgagtcggtcgtgtgcatggcgacttggctccgcgtgaacgcgtc
aaaatgatgcgtcaaatccgtgacctggaatatcaatacatcgtagcgacagatcttgct
gcacgaggcattgatatccaaggagtcagccacgttatcaactatgaattgcctgaagac
ctagaattctttattcaccgtgttggtcgtacagctcgcgcaggaatgaaggggctagct
attacactattcaagccagaagaagacgatgccattgtccgtattgaaaaaatgggcatt
cctttccagcaaaaggatatcattaaaggcgaattcgttgatttgaaagagcgtcatagc
cggacgacgcgcacgaaaaaagcaaacgaaatagacgctaaagcgaaaacgatggttcac
aagccgaaaaaggtaagacctatgtacaaaaagaaaatgaagtggaaaatggatgaaatc
aaaaaagcggaacgacgcaaaaatcgcaaatag
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