Planococcus antarcticus: BBH88_13765
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Entry
BBH88_13765 CDS
T04428
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pana
Planococcus antarcticus
Pathway
pana03410
Base excision repair
pana03430
Mismatch repair
pana03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pana00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
BBH88_13765
03430 Mismatch repair
BBH88_13765
03440 Homologous recombination
BBH88_13765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pana03400
]
BBH88_13765
DNA repair and recombination proteins [BR:
pana03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
BBH88_13765
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
BBH88_13765
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BBH88_13765
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ssDNA-exonuc_C
RecJ_OB
DHHA1
DHH
Motif
Other DBs
NCBI-ProteinID:
ANU11285
UniProt:
A0ABM6D6Z0
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All DBs
Position
1540844..1542847
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AA seq
667 aa
AA seq
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MIPNRFKHGYGPNSELFQQAFDNGTKLIVTVDNGISGMEQVDFANSLGMDVIISDHHDIG
DQLPNALAVVHPRHPEGNYPFGELAGVGVAFKMAHALYEEIPDHLIELTAIGTVADLVPL
HGENRLFVKEGLAALIDSPSPAISALCEVAGIKQQDITEETIGFMFGPRINAIGRLQDAD
PAVQMFLTEDPTEARSLASGLDVLNKERQAIVKQISEEAMQQVEQRYPNGVPRVIVVAQE
GWNPGVVGIVASKLTEKFYRPSIVLSLNPETGKAKGSARSIEGFHLYNELAKNRDILPHF
GGHPMAAGMTLEASVVDDLRERLNKQAETSLSEEDLLPVIEIDIPLRLDEIDITAIESMR
LLAPFGMGFAKPKFYLEGVKVASIRKIGAAQNHLKMELTQHVGSLDAVGFGLGPIGDELT
PDVKIDVIGDLQINEWNGRKKPQLMVEDVRTDQWQLFDIRGIRQVSRWSKLIPQENQVFL
AFNEDTPALFQSFLSQSICTVAQLDNVPGNKDHLVLLDLPESEEQLAAVLAKLKPKRIYA
HFHAKDSQYFEQIPTREQFKWLFAFIKKRGSFDFNKHCDELAKHKGWRRESIFFMLQVFF
ELGFVTLNNGITEIAQSPSKQDLSEAPIYKKREQQIALEQKLLYASYKDLKEWFDAKVSA
KEEEIWI
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgataccgaaccgctttaagcacggatacggaccgaatagcgaactgtttcagcaggca
ttcgataacggaaccaaactaattgtaactgttgataacggcatttctggcatggaacaa
gtcgattttgccaacagtttaggaatggatgtcatcatcagtgatcatcacgatatcggt
gatcagttgccaaatgcgttagcggttgttcatccgcgtcatccagaagggaattatcct
ttcggtgaacttgccggagtgggtgtagcgtttaaaatggcgcatgctttgtacgaagaa
attccggatcacttgattgaactgacagcgatcggcactgttgccgatctcgtcccgctc
cacggcgaaaaccggctgtttgttaaagaaggtctggctgcgctaatcgattcgccgagt
ccagcaatctcggcattatgcgaagtggcaggtatcaaacagcaagacattacggaagag
accatcggctttatgtttggcccacgtattaatgcaatcggccgtttgcaagacgccgat
cctgctgtccagatgttcttaacagaagacccaacagaagcacgttcactagcttcagga
cttgatgttttaaataaagagcggcaagcgatcgtcaagcagatttcagaagaagcgatg
cagcaagtggagcagcgctatccaaacggtgtgccgcgcgtgattgtggtggcccaggaa
ggctggaatcctggagttgtcggcatcgtcgcatcaaaactgacagagaaattttatcgt
ccatcgatcgtgctgtcgctgaaccctgaaaccggcaaagcgaagggctctgcccgcagc
attgagggatttcatttgtataacgagctggccaagaaccgggacattttgcctcatttc
ggcggacatccaatggcagccggcatgacgcttgaggcgtctgttgtggatgatttacgc
gaacggctcaataagcaagcggaaaccagcttgtctgaagaggacctgttgccggtcatt
gaaatcgacatcccgctccgtctagatgaaattgatatcacagccatcgaatcgatgcgg
ttgctggcgccttttggtatgggttttgccaaaccaaagttttatcttgagggtgtaaaa
gtggcatctattcgtaaaatcggagcagcacaaaaccacttgaaaatggagttgacgcag
catgtcggatctttggatgctgttggcttcggactcggcccaatcggagatgagttgacg
ccggacgtcaaaatcgacgtcatcggagatttgcagatcaatgaatggaacggtcggaaa
aaaccgcaattgatggtggaggatgtccgtacggatcaatggcaattatttgatatccgt
ggcattcgccaagtgtcgcgctggtcgaagctgattcctcaagaaaaccaggtcttcttg
gcttttaacgaggatacaccggctttattccagtcattcctgtcgcagtcgatctgcaca
gttgctcagttggataacgtgccaggaaataaagatcatcttgttctgctggacctgccg
gaatcggaagagcaattagcagccgtgctggcgaaattgaagcccaagcggatctatgcc
catttccatgccaaggattcgcagtattttgagcagattccgacgcgtgaacagtttaaa
tggttgttcgctttcatcaagaaacgtggatctttcgatttcaataaacattgcgacgaa
ctggcaaaacacaaaggctggaggcgtgaatcaatctttttcatgctgcaggtgtttttt
gaactcggttttgttacacttaacaatggcattaccgagattgcacaatcgccgagcaaa
caggatttgtcggaagcgccgatttacaagaagcgcgagcagcagattgccctagagcaa
aagcttttgtatgcatcttataaagatttaaaagagtggttcgatgcgaaagtgtctgcc
aaggaggaagaaatatggatttga
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