Planococcus antarcticus: BBH88_15485
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Entry
BBH88_15485 CDS
T04428
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pana
Planococcus antarcticus
Pathway
pana03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pana00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBH88_15485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pana03019
]
BBH88_15485
03016 Transfer RNA biogenesis [BR:
pana03016
]
BBH88_15485
Enzymes [BR:
pana01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BBH88_15485
Messenger RNA biogenesis [BR:
pana03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BBH88_15485
Transfer RNA biogenesis [BR:
pana03016
]
Prokaryotic type
tRNA degradation factors
BBH88_15485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
CSD
OB_Dis3
S1_RRP5
CsrA
Glyco_H_20C_C
Motif
Other DBs
NCBI-ProteinID:
ANU12268
UniProt:
A0ABM6DAB5
LinkDB
All DBs
Position
1206320..1208599
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AA seq
759 aa
AA seq
DB search
MREEAYKPLTVQEIEEQFGFEDADEFKELVKKLVRLEESGTLVRSRSNRYGVPERMNLMR
GKFIGHPKGFGFVAPEEAGLDDVFIPPTETNGAVNGDKVLIRISEGSSGDRREGAIIRIV
ERGTTKAVGTFQENKGFGFVVTDDKKMNMDIFIAKDDTLGAVDGHKVVVEITGWPEGRKS
ATGMVTQILGHKNDPGVDILSIIHKYGIETEFPPDVLEQANNVPDEIDPADLAERRDLRN
EQIVTIDGADAKDLDDAVQVVKYEDGTYKLGVHIADVSHYVTEGSAIDREAYDRATSIYL
TDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMIFNDQGEVQSHEIFQSVINTSARMTYTD
VYEILEQDNQELKERYSELVPMFELMKELAGVLSAKRMRRGAIDFDFKESKVLVDENGYP
VDVVVRERTVAERLIEEFMLAANETVAEHFHRMEVPAIYRIHEDPKPEKLQRFFEFVTNF
GIVVKGSGTQIHPRALQEIVESIAGTPEEPVVSTMMLRSMQQAKYSSESLGHFGLSTEFY
THFTSPIRRYPDLIVHRLIRTYLIEKDLSQKTIARWDANMDDIATHTSERERRAVEAERD
TDALKKSQFMADKIGEQFTGIISSVTNFGLFIELPNTIEGLVHVSNMTDDYYRFDDRSMM
MIGERTSRQFRIGDEIEIKVIGVKPEESSIDFEIVGMVQNTRQSRREQPKVIRANKKDGG
GKPGRDGKKQEGGGPTRKSKNVKKKFYEGAAKQGRNKKK
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgaagaagcatataagccgctgactgtacaggaaatagaagaacaattcggtttt
gaagatgccgacgaatttaaggaactagtaaaaaaattggtgcgcttggaagaatcagga
acgcttgtccgctcaagatccaaccgctatggcgtaccggagcgaatgaatttaatgcgc
ggaaaattcatcgggcatccaaaagggttcggttttgtcgcacctgaagaagccggttta
gatgatgtctttattccgcctactgaaacaaatggcgcagtgaacggtgataaagtactg
atccgcatttcagaaggatcttctggagaccgtagggaaggcgcgattatccggatcgtt
gaacgcggtactacaaaagctgtcggaacattccaagaaaataaaggctttggctttgtc
gttacagacgacaagaaaatgaatatggatatctttattgccaaggatgacactttaggt
gcagtagacggccataaagtcgtcgtagagattacagggtggcctgaaggcagaaagtct
gcaacaggcatggtgacgcaaattcttggccataaaaacgacccgggtgtcgatattctt
tcgattatccataaatacggcattgaaaccgagtttccgccggatgtgttggaacaggca
aataatgtgccggatgaaatcgacccggcagatttggctgaacgccgtgacttgcgcaac
gaacagattgtcacgattgatggcgccgatgccaaagacttggatgatgcagttcaagtg
gtgaaatatgaagatggcacgtataaattaggtgttcacatcgctgacgttagtcattat
gtcaccgaaggatccgccattgatcgtgaagcttatgaccgcgctacaagcatctacttg
actgaccgcgtaattccaatgattccgcatcgtctgtctaacggtatctgttcattaaat
cctcaggtcgaccgtctgactttgtcttgtgaaatgattttcaatgaccaaggcgaagtt
caatctcatgaaattttccaaagcgtcatcaatacgtcagctcgtatgacttatactgac
gtttatgaaattttagagcaggacaaccaggagctgaaagaacgatacagtgaattggtg
ccgatgttcgaattaatgaaggagctagccggagtcttaagcgcgaaacggatgcgccgc
ggcgccatcgatttcgatttcaaggaatcaaaagtgctggtggacgaaaacggctaccca
gtagacgttgttgttcgtgaacgcactgttgctgaacgtctgattgaagagtttatgctg
gctgccaacgaaacagtggctgaacatttccaccgcatggaagttcccgctatctaccgc
atccatgaagatccaaagccggaaaaactgcagcgctttttcgaatttgtcacgaacttc
ggcattgttgtgaaaggctctggaacacagattcatccgcgtgcattgcaggagatcgtc
gagtccattgcaggaacgccagaagagccagtggtttctacgatgatgctgcgttccatg
caacaggcaaaatattcttctgagagcttaggacatttcggtttatcgactgaattctat
acgcatttcacttcgccgattcgtcgttatccggatttaattgtccatcgcctcatccgc
acgtatttgattgaaaaagatttgtctcagaaaacaatcgctcgttgggatgctaatatg
gatgacatcgcgactcacacatcagaacgtgaacgccgtgcagtagaagctgaacgcgat
accgatgctttgaagaaatctcaatttatggctgataaaatcggcgaacagtttacagga
atcatttcatcagtaacaaatttcggtttattcattgaattgccaaataccattgaaggt
ttagtgcacgtttccaatatgaccgatgattattaccgctttgacgatcgcagcatgatg
atgattggtgaacgaacaagccgtcaattccgtatcggtgacgaaatcgaaatcaaagtc
attggtgtaaaaccagaagaatcatctattgactttgaaatagtcggcatggtgcaaaat
acgcgtcaatcaagaagagagcagccgaaagtgatccgtgctaataaaaaagatggcggc
ggaaaaccaggacgcgatggcaaaaaacaagaaggcggcggacctacgcgcaaatcaaaa
aacgtgaagaaaaaattctatgaaggcgcagcaaaacaagggcgcaataagaaaaaataa
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