Paenisporosarcina antarctica: E2636_00735
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Entry
E2636_00735 CDS
T05927
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
panc
Paenisporosarcina antarctica
Pathway
panc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
panc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E2636_00735 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
panc03021
]
E2636_00735 (rpoC)
03400 DNA repair and recombination proteins [BR:
panc03400
]
E2636_00735 (rpoC)
Enzymes [BR:
panc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E2636_00735 (rpoC)
Transcription machinery [BR:
panc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E2636_00735 (rpoC)
DNA repair and recombination proteins [BR:
panc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E2636_00735 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
QBP39774
UniProt:
A0A4P6ZUK7
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All DBs
Position
149922..153524
Genome browser
AA seq
1200 aa
AA seq
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MIDVNNFEYMKIGLASPDKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVTHIWYFKGIPSRMGLILDM
SPRSLEEVIYFASYVVVDPANTPLERKQLLSEKEYRAYREKYGKKFYAAMGAEAIKRLLQ
DLDLEKETEVLKEELKTAAGQRRTRAIKRLEVVESFRNSGNKPDWMVLDVLPVIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MAIELFKPFVMKELVERGLAHNIKSAKRKIERMHSEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKGATGEGSSFYGPNEVLIAYQNGNAHLHTRIGIL
AGSLNNQTFTAEQNKMLLLTTVGKVIFNEILPESFPYINEPTDFNLQVETPSKYFVPTTT
NVREHIAGMELVSPFKKPILGNIIAEVFKRFHITETSKMLDRMKNLGFKYSTRAGITIGI
SDIVVLPDKGEVLEEAQDKVDKVLKQFRRGLITEEERYDRVISYWSAAKDVIQAKLMKSL
DNLNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVREDECGTDRGLLIGALMDGTEVIEGFD
ERIAGRHTRKTIYHPVTKKVILEKDGLITEDVARVILDVGFTELTIRSAFTCNTKHGVCK
KCYGTNLATGENVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
ESRNPKGQAVISEITGVISAIEEIREGQKEITVQGDVETRKYLAPYNGRLKVELNDPIKR
GEVLTEGSIDPKELLKVKDVLTVQVYLLKEVQKVYRMQGVEIGDKHIEVMVRQMLRKVRV
IEAGETELLPGSLLDIHQFAEANKEAVLSGKIPATCRPVILGITKASLETESFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMQRYRQIKIVDQKKNDSKITVNAE
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
ttgatagacgttaataattttgagtacatgaagattggtttagcatctccagacaagatt
cgttcttggtcttatggtgaagtaaagaagcctgaaacgattaactaccgtacacttaaa
cctgaaaaagatggtttgttctgtgagcgcattttcggtccaacaaaggactgggaatgt
cattgtggtaagtataagcgtgttcgttataaaggcgttgtttgtgatcgttgtggcgta
gaagttacacgttcaaaagttcgtcgtgaacgcatgggtcacattgaattagcggctcct
gtaacacatatttggtatttcaaaggtattccaagtcgaatgggactaattttagatatg
tctccgcgttctttagaagaagtgatttactttgcatcttatgtagtagtagatcctgca
aatacgccacttgagcgtaagcagcttttgtctgaaaaagaatatcgtgcttatcgtgaa
aaatatggcaagaaattttatgcagcaatgggtgctgaagcaattaaacgtcttcttcaa
gatcttgatcttgaaaaagaaacagaagtgctgaaggaagaacttaaaactgcagctggt
caacgacgtactcgtgcgattaagcgtttagaagtagttgagtcattccgtaactctggt
aataaacctgattggatggttttagacgtccttccagtaatacctccagaaatacgccca
atggttcaattagatggtggccgttttgctacttcagatttaaatgatttgtatcgtcgt
gttatcaaccgtaataaccgtttaaaacgtttacttgaccttggtgctccaagtatcatc
gttcaaaacgaaaaacgtatgttacaagaagctgttgatgctttgattgataatggtcgt
cgtggtcgcccagttacaggaccaggtaatcgtccattgaaatcactgtcacatatgtta
aaagggaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgttgactactctggt
cgttcggttatcgttgtaggtccaaacttaaaaatgtatcaatgtggacttccaaaagaa
atggcaattgaattattcaaaccatttgttatgaaggaacttgttgaacgtggcttagct
cacaacattaagagcgcgaaacgtaaaattgagcgtatgcattcggaagtttgggatgta
ttagaagacgtcattaaggagcatccggttttattaaaccgcgcaccgacgcttcataga
ctaggtattcaagcattcgaacctacattagtagaaggtcgtgcgattcgtcttcaccct
cttgtatgtacagcttataacgctgacttcgatggtgaccaaatggctgttcacgtacct
ttatcagcagaagcgcaagctgaagctcgtttacttatgctagctgcacaaaacatttta
aacccgaaagatggtaagccagttgttacaccatctcaagatatggttttaggtaactat
tacttaacgcttgagcgtaaaggtgcaacaggagaaggttcatcattctacggtccaaat
gaagtgttgattgcttatcaaaacggtaatgcgcatttgcatacacgtattgggatttta
gcaggttcattgaacaaccaaacattcactgcagaacaaaacaagatgttgttattgact
acagtcggaaaagttattttcaatgagattttacctgaatcattcccgtatattaacgaa
ccaacggacttcaaccttcaagttgaaacaccgtctaaatattttgttccaacaacgaca
aatgtacgagaacatattgctggcatggaacttgtatcaccgttcaaaaagccgattctt
ggaaatatcatcgctgaagtgtttaaacgtttccatattactgaaacgtcgaaaatgctt
gatcgcatgaaaaatctaggtttcaaatactctactagagctggtattacaattggtatc
tctgatatcgtggtacttccagataaaggtgaagttttggaagaggctcaagataaagtt
gataaagtacttaagcaattccgtcgtggtttaattacagaagaagagcgctatgatcgt
gttatttcttactggagtgctgcgaaggacgttattcaggcaaaactaatgaaatctcta
gataatttaaacccaatcttcatgatgagtgactctggagcgcgtggtaacgcatctaac
tttactcaacttgcaggtatgcgtggtttgatggccaatccggccggtcgtattatcgag
cttccaattaaatcatcattccgtgaaggtttaacagttcttgaatacttcatctctact
catggtgctcgtaaaggtcttgcggatacagcacttaaaacagctgactcaggttactta
acacgtcgattagttgacgttgctcaagatgttattgttcgtgaagatgaatgcggaacg
gaccgtggcttattgattggcgcattaatggatggcacagaagttattgaaggatttgac
gagcgtattgctggtcgtcatactcgcaaaacaatttaccatccagtaacgaaaaaagtt
attttagaaaaagatggtttaattacagaagacgtagctcgcgttattttagatgttgga
ttcacagagcttacaattcgttctgcattcacatgtaacacgaaacacggcgtatgtaaa
aaatgttatggtacaaacttagcgactggtgaaaatgttgaagttggagaagcagttggt
ataattgctgcccaatcgatcggtgagccaggtactcagttaacgatgcgtactttccat
acaggtggggtagccggggatgatattacacaaggtcttccacgtatccaagagattttc
gaatctcgtaatcctaaaggtcaagcggttatttcagaaattacaggagttatctctgca
attgaagaaattcgtgaaggtcaaaaagaaattacagttcaaggtgatgttgaaacgcgt
aaataccttgctccgtataatggtcgtttgaaagttgaactaaatgacccaattaaacgt
ggtgaagtattaacagaaggttcaattgatccgaaagaattgttgaaagtcaaagatgta
ttaactgtacaagtatacttattgaaagaagttcaaaaagtatatcgtatgcagggtgtt
gagatcggtgacaaacatatcgaagtaatggttcgccaaatgcttcgtaaagtgcgtgtt
atcgaggcgggtgaaactgagctattacctggttcattactcgatattcaccaatttgca
gaagcgaataaggaagctgtgttaagtgggaaaatccctgctacatgtcgtcctgtcatt
cttggtataacgaaagcatctcttgaaacagaatctttcttatcagcagcatcattccaa
gaaactacgcgtgttttaacagacgcggcaattaaagggaaacgtgatgaactactgggc
ttgaaagaaaacgtaattattggtaaactagttccagctggtaccggtatgcaacgttac
cgtcagattaagattgttgatcaaaagaaaaatgattctaaaataacagttaacgctgaa
taa
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