KEGG   Pandoraea sp. XY-2: DRB87_09100
Entry
DRB87_09100       CDS       T06086                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
pand  Pandoraea sp. XY-2
Pathway
pand02024  Quorum sensing
pand03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pand00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DRB87_09100
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    DRB87_09100
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pand03019]
    DRB87_09100
   03036 Chromosome and associated proteins [BR:pand03036]
    DRB87_09100
Messenger RNA biogenesis [BR:pand03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     DRB87_09100
Chromosome and associated proteins [BR:pand03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    DRB87_09100
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: QBC31486
LinkDB
Position
1984692..1984928
AA seq 78 aa
MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI
STVVPARPVNFHPEAEQS
NT seq 237 nt   +upstreamnt  +downstreamnt
atgagcaacaaagggcaacttctacaagacccgtttctgaacgccttgcgtaaggagcat
gttcccgtctcgatctatctggtcaacggtatcaagctgcagggaaacatcgagtcgttt
gaccagtatgtcgtcctgctgcgcaacacggtcacccaaatggtttataagcatgccatt
tcgacggtcgtgcctgcgcgtccggtgaatttccatccggaagccgagcagtcctga

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