Pandoraea sp. XY-2: DRB87_14825
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Entry
DRB87_14825 CDS
T06086
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pand
Pandoraea sp. XY-2
Pathway
pand02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pand00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DRB87_14825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pand03021
]
DRB87_14825
Transcription machinery [BR:
pand03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DRB87_14825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
SPO22
GSH-S_ATP
GerE
Motif
Other DBs
NCBI-ProteinID:
QBC33939
LinkDB
All DBs
Position
complement(3261755..3263857)
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AA seq
700 aa
AA seq
DB search
MEVVSAASESLVPRTRGKAAKTAASVAQSVAADTSDQPVNEDQTKVEKQKARDRRAKEKA
LLKDAFSSHQPGTAEELEERRGKLRALIKLGKERGFLTFAEINDHLPDDVVEGDALEGVI
ATFNDMGVAVYEQAPDAETLLLNDNAPNAATDDEVEEQAEAALSTVDSEFGRTTDPVRMY
MREMGTVELLTREGEIEIAKRIEEGLKHMVQAISACPTTIAEILAMAEKVEREEMRIDEV
VDGLIDPNAEAVAAAAAAAAEDEDFDADADAEEEEAEEAADEDDDSSGGGASAAQVEQLK
RDALAKFAEIADWFGKMRRAFEKEGYQSKSYVKAGEAIQAELMTIRFTARTVERLCDTLR
SQVDEVRNIERAILNIVVDKCGMPRADFVSRFPGNETNLDWIYTVVADNKAYSSVVERNV
PAVRELQQKLIDLQARVVLPLTELKDVNRKMSEGERRARKAKREMTEANLRLVISIAKKY
TNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV
HMIETINKMNRISRQILQETGVEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDD
DDSHLGDFIEDTGTVAPADAALHGSMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLE
EVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
gtggaggtcgtgtcggcagcaagtgagtcgctcgtccccaggacgcgcggcaaggccgcg
aagaccgccgcctcggtggcgcagagcgtcgcagcggatactagtgatcaacccgtgaac
gaagatcagaccaaagtggaaaagcagaaggcgcgtgatcgccgggcaaaagagaaagca
ctgctcaaggacgcattttcctcgcaccagcccggtacggccgaggaacttgaggagcgt
cgtggcaagctgcgggcactgatcaagctgggtaaggaacgaggcttcctgacctttgca
gagatcaacgaccacctgcccgacgacgtggtggagggcgacgcgctggaaggcgtgatc
gctacgtttaacgacatgggcgttgccgtgtacgagcaggcacccgatgccgaaacgctg
ttgctcaacgacaatgcgccgaacgccgcaacggatgacgaagtcgaggagcaagcggaa
gcggccctgtcgacggtcgactccgagtttggccgcacgaccgatccggtgcgtatgtac
atgcgcgagatgggcacggtcgagttgctgacgcgcgagggcgaaatcgagatcgccaag
cggatcgaggaaggcctgaagcacatggtgcaggcgatttccgcgtgcccgacgacgatt
gccgaaattctggcgatggccgagaaggtcgagcgcgaagaaatgcgcatcgacgaggtg
gtcgacggcctgatcgatccgaatgccgaagcggttgccgcagcggcggcggcagcggcc
gaagacgaagacttcgacgcggatgcggacgcggaagaggaagaagcggaagaggcggct
gacgaggacgacgacagcagcggcggcggggcgtcggccgcgcaggtcgagcagctcaag
cgtgacgcgttggccaagttcgccgagatcgccgactggtttggcaagatgcgtcgcgcg
ttcgagaaggaaggctaccagtcgaagtcgtacgtgaaggctggcgaggcgatccaggcg
gaactgatgacgatccgcttcacggcgcgcacggttgagcgtctgtgcgacacgctgcgt
tcgcaagtcgacgaagtgcgcaacatcgagcgcgctatcctgaatatcgtggtcgacaag
tgcggcatgccgcgtgcggatttcgtgtcgcgtttcccgggcaacgaaaccaatctcgac
tggatctacacggtcgtggcggacaacaaggcgtacagctcggtggttgagcgtaatgtc
cctgcggtgcgtgaattgcagcagaagctgatcgacttgcaggcgcgcgtggtgttgccg
cttaccgagttgaaggacgtcaatcgcaagatgtcggaaggcgagcgccgtgcacgcaag
gccaagcgcgagatgaccgaagcgaacttgcgtctggtgatttcgattgcgaagaaatac
acgaaccgtggcctgcagttcctggatctgattcaggagggcaacattggcctgatgaag
gcggtggacaagttcgaataccgtcgtggttacaagttctcgacgtatgcgacgtggtgg
attcgtcaggccattacgcgttcgatcgcggaccaggcacgtaccatccgtattccggtg
cacatgatcgagacgatcaacaagatgaaccggatttcgcgtcagattctgcaggagacc
ggtgtcgagccggatccggcgacgctggccgagaagatggagatgccggaggacaagatc
cgcaagatcatgaagatcgcgaaggagccgatctccatggaaacgccgatcggtgacgac
gacgattcgcatctgggcgatttcatcgaagacacgggcacggttgcccctgcggacgcc
gcgttgcatggtagtatgcgcgacgtcgtgaaggatgtgctcgattcgctgacgccgcgc
gaggccaaggtgttgcgcatgcggtttggtatcgagatgagcacggaccatacgctcgag
gaagtgggcaaacaatttgacgtgacgcgtgagcgtattcgtcagatcgaagccaaggcg
ctgcgcaagctgcgtcacccgagccgttccgacaagctcaagtcgttcctcgaaggcaat
tga
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