Pandoraea sp. XY-2: DRB87_15345
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Entry
DRB87_15345 CDS
T06086
Name
(GenBank) lytic transglycosylase
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
pand
Pandoraea sp. XY-2
Brite
KEGG Orthology (KO) [BR:
pand00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pand01011
]
DRB87_15345
Enzymes [BR:
pand01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
DRB87_15345
Peptidoglycan biosynthesis and degradation proteins [BR:
pand01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
DRB87_15345
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Gene cluster
GFIT
Motif
Pfam:
SLT
LysM
LysM1_NFP_LYK
PhnJ
Motif
Other DBs
NCBI-ProteinID:
QBC32454
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All DBs
Position
complement(3391163..3392845)
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AA seq
560 aa
AA seq
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MRLIVSLLLTLLLAACAGTAPTNGALSSTPTAQGQSPLVTTAKGKQRVSSDQTIDLDSDS
INDLAYGSDDADLWSRIRHGFAIPDLDTDLAQDRTQWYAQRPEYVERMIERSSKYLFHIV
EELERRHMPTELALLPFVESAYNPQALSTAKAAGMWQFIPSTGKTYNLKQNMFQDERRDV
LASTTAALDYLSKLYAMFGDWQLALAAYNWGEGNVQRAIERNQAQGLPTDYLSLRMPTET
RYYVPKLQAIKNIIAHPEIYSVKLPEIPNHPYFVSVTTKRDIDVALAAKLADLPLDEFRA
LNPSFRKPVILGAAQPKILLPFDSAEVFQRRLKGYDKPLSSWTTYTSASRERPEDVARKL
GVDAAVIRSVNNIAPRMRLKAGSTLLVPRSDDIDQDISASVARNAVLALEPDIPDTRKVM
VRARKHDTLARVAQRSGVSVAQIKSWNRLRRDTLTSGQLLVLHVPVKDALRVAAASEAPA
ASGDGEAPRTRLVRGKHGKMIRVVERRPAVSQAKTTKAAASGGKTARTKVAAKAPAKTVA
RTAAKPAAKTSSKVTRTAQR
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgcgacttatcgttagcttgctactgacgctgcttctggcggcgtgtgccggcacagca
ccgaccaacggtgcattgagttccacgccgactgcgcaaggccaatcgcctctcgtcacg
acggccaaaggcaagcaacgcgtctcaagcgatcagaccatcgacctggacagcgactcg
atcaacgatctggcctacgggagcgacgacgccgacctctggtcgcgcattcgtcacggt
ttcgcgattcccgatctggacaccgacctcgcgcaggaccgcacacagtggtacgcgcag
cgtcccgaatatgtcgagcgcatgatcgagcgctcgagcaagtatctgttccacatcgtc
gaagaactcgagcgccgtcatatgccgacggaactcgcgctgctgccgttcgtggaaagc
gcgtacaacccgcaggcgctctcgacggcgaaggcggccggcatgtggcagttcattccc
agcacgggcaagacgtacaacctcaagcagaacatgttccaggacgagcgccgcgacgtg
ctcgcctcgacgacggcggcgctcgactacctctcgaagctctatgcgatgttcggtgac
tggcaactggcgctcgcggcctataactggggcgagggcaacgtgcagcgcgcgatcgag
cgtaatcaggcgcaagggttgccgaccgattacctgagcctgcgcatgccgaccgagacg
cgttactacgtgccgaagctgcaggcgatcaagaacatcattgcgcacccggaaatctac
agcgtgaagctgcccgagattccgaatcacccgtatttcgtcagcgtaaccaccaagcgc
gacatcgacgtggcattggccgcgaagctggccgacctgccgctcgacgaattccgcgcg
ctcaatccgtcgttccgcaagccggtgattcttggcgcggcacagccgaaaattctcctg
ccgttcgatagcgccgaagtgtttcagcgtcgtctgaagggctatgacaagccgctatcg
agctggacgacctacacgtccgcatcgcgtgagcggccggaagacgtcgcgcgcaagctg
ggtgtcgacgccgcggtcatccggtcggtcaataacattgcgccgcgcatgcgcctcaag
gcgggctcgacgttgctggtaccgcgctcggacgacattgaccaggacatcagcgcgtcg
gtggcacgcaatgccgtgcttgcgctggagccggatattcccgatacgcgcaaggtgatg
gtgcgcgctcgcaagcatgacacgctcgcccgcgtggcccagcgcagtggcgtgagcgtt
gcgcagatcaagagctggaatcgtctgcgtcgcgatacgctcacgtcgggccaactgctg
gtgcttcacgtaccggtcaaggacgccttgcgcgtggcagctgcgtccgaggccccggcg
gcctcgggggacggcgaagccccgcgcacgcgtctggtgcgcggcaagcacggcaagatg
attcgcgtggtggagcgtcggccggcggtcagccaggccaagacaaccaaggcggctgca
tccggcggcaagacggcccggaccaaggttgcggcgaaggcgccagccaagacggtggcc
aggacggccgcgaagccggcggccaagacatcctcgaaggtcacccgcacggcacagcgc
tga
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