Pandoraea sp. XY-2: DRB87_17510
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Entry
DRB87_17510 CDS
T06086
Name
(GenBank) phosphomethylpyrimidine synthase ThiC
KO
K03147
phosphomethylpyrimidine synthase [EC:
4.1.99.17
]
Organism
pand
Pandoraea sp. XY-2
Pathway
pand00730
Thiamine metabolism
pand01100
Metabolic pathways
pand01240
Biosynthesis of cofactors
Brite
KEGG Orthology (KO) [BR:
pand00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00730 Thiamine metabolism
DRB87_17510
Enzymes [BR:
pand01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.17 phosphomethylpyrimidine synthase
DRB87_17510
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ThiC_Rad_SAM
ThiC-associated
Motif
Other DBs
NCBI-ProteinID:
QBC32780
LinkDB
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Position
3872318..3874234
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AA seq
638 aa
AA seq
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MNANPKFLSANARVDEAAIAPLPNSRKIYVEGSRPDLRVPMREISQADTPTSFGGEKNPP
IFVYDTSGPYTDPDAQIDIRSGLPALRAAWIEERGDTEALPGMTSAYGRERAADDATAEL
RFPGLHRTPRRAKAGKNVTQMHYARQGIITPEMEYIAIRENLRRQEYIESVRNAGPQGER
LAKLLSRQHPGQHFGASLPAEITPEFVRSEIARGRAIIPNNINHPESEPMIIGRNFLVKI
NANIGNSAVTSSIGEEVDKMTWAIRWGGDTVMDLSTGKHIHETREWILRNSPVPIGTVPI
YQALEKVNGKAEDLTWEMFRDTLIEQAEQGVDYFTIHAGVRLAYVPMTANRMTGIVSRGG
SIMAKWCLAHHKESFLYTHFEEICEIMKAYDVAFSLGDGLRPGSIYDANDEAQLSELKTL
GELTQIAWKHDVQVMIEGPGHVPMQLIKENMDLQLEYCDEAPFYTLGPLTTDIAPGYDHI
TSGIGAATIGWYGTAMLCYVTPKEHLGLPNKDDVKEGIITYKLAAHAADLAKGHPGAQIR
DNALSKARFEFRWEDQFNLGLDPDKAREFHDETLPKDSAKVAHFCSMCGPHFCSMKITQD
VRDYAAKQGLTDEAALKQGMEVKAVEFVKSGAEIYRRT
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccaatccgaaattcctctcagccaatgcgcgcgtggatgaagccgcgatcgca
ccgctgccgaattcccgcaagatttacgtggaaggctcgcgccccgacctgcgtgtcccg
atgcgcgaaatctcgcaagccgacacgccgacaagctttggcggtgaaaagaatccgccg
atcttcgtatacgacacctccggtccgtacaccgatccggacgcccaaatcgacatccgc
tccggcctgcccgccctgcgcgcggcatggatcgaggagcgcggcgacaccgaagcgctg
ccgggcatgacgtccgcctacggccgcgagcgcgccgccgacgacgccaccgccgagcta
cgcttcccgggtctgcatcgcacaccgcgccgcgccaaggccggcaagaacgtgacgcag
atgcattacgcgcgtcagggcatcatcacgcccgagatggaatacatcgcgattcgcgaa
aacctgcgccgtcaggaatacatcgagagcgtgcgcaacgccggcccgcagggcgagcgt
ctggccaagctgctctcgcgccagcatccgggtcagcatttcggcgcgagcctccccgcc
gaaatcacgccggaattcgtacgcagcgaaatcgcacgcggtcgcgccatcatcccgaac
aacatcaaccacccggaatcggagccgatgatcatcggccgcaacttcctcgtgaagatc
aacgcgaacatcggcaactcggccgtgacctcgtcgatcggcgaggaagtggacaagatg
acgtgggcgatccgctggggcggcgacacggtgatggatctgtcgaccggcaagcacatc
cacgagacgcgtgaatggatcctgcgcaacagcccggtgcccatcggcacggtgccgatc
tatcaggcgctcgagaaggtgaacggcaaggccgaagacctgacgtgggaaatgttccgc
gacacgctcattgagcaggccgagcaaggcgtcgactacttcacgattcacgccggcgtg
cgcctcgcgtacgtgccgatgaccgccaaccgcatgactggcatcgtgagccgcggcggc
tcgatcatggccaagtggtgcctcgcgcaccataaggaaagcttcctctacacgcacttc
gaagagatctgcgaaatcatgaaggcctatgacgtcgcgttctcgctgggcgacggcctg
cgtccgggctcaatctatgacgccaacgacgaagcacaactctccgagctgaagacgctg
ggtgagctcacgcagatcgcctggaaacacgacgtgcaggtgatgatcgaaggcccgggc
cacgtgccgatgcagctcatcaaggagaacatggatctccagctcgagtactgcgacgaa
gccccgttctatacgctcggaccgctgacgacggacatcgcccccggctacgaccacatt
acgtcgggcatcggggcggcgaccatcggctggtacggcaccgccatgctgtgctacgtc
acgccgaaggaacacctcggcttgccgaacaaggacgacgtgaaggaaggcatcatcacg
tacaagctcgccgcgcacgccgccgatctcgccaagggccacccgggcgcgcagattcgc
gacaacgcgttgtcgaaggcgcgtttcgagttccgttgggaagaccagttcaatctgggt
ctcgatccggacaaggcgcgtgaattccacgacgagacgctgccgaaggactcggccaag
gttgcccacttctgctcaatgtgcggaccgcacttctgctcgatgaaaatcacgcaggac
gtgcgcgattacgccgccaagcaaggcctgaccgacgaagccgccctcaagcagggcatg
gaagtcaaggcggtggagttcgtcaagagcggcgccgaaatttatcgtcgcacctga
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