Pandoraea sp. XY-2: DRB87_19855
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Entry
DRB87_19855 CDS
T06086
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pand
Pandoraea sp. XY-2
Brite
KEGG Orthology (KO) [BR:
pand00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pand03016
]
DRB87_19855
Enzymes [BR:
pand01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DRB87_19855
Transfer RNA biogenesis [BR:
pand03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DRB87_19855
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
ADAMTSL1
Motif
Other DBs
NCBI-ProteinID:
QBC34048
LinkDB
All DBs
Position
complement(4382118..4384196)
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AA seq
692 aa
AA seq
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MNIFFEESGGFKAGTVLSQQGESYQVELPGGRRSKIKGRDVLLRFESPSPAELMTQAHAA
AQDIDMSFLWECAPAEEFAFPVLAAEYFGEGAGVAQQAGLALALQASPVYFRRKGRGQYQ
RAPEEQLQAALAGLARKQQQAELQAVYADQLIAGTLPDALRGKELQLLFRPDKNTIEWKA
LDAAAMALGKTHAEVMLACGGISSPRAYHEAAFLYEHFPRGTGFPELGPTPVPGDDLPLA
DVQAFSIDDSTTTEIDDALSVQVLPDGLLRVGIHIAAPALGITRGDAIDEIARVRLSTVY
APGEKITMLPDAVVEAYTLAEGGARPALSLYVVVKADTYEIVATETHAERVPISANLRHN
ELDAIITAETLADGSGEYPHKEALRLLWPFAQSLYEKRQAARVGYGLRPEVQNKTDFNFY
VEGEQVTIKQRMRGAPLDLIVAEMAILANSRWGRLLAECGVPGIYRAQRAYGVNRTRMQT
SPAPHEGLGVEQYAWSTSPLRRYVDLVNQWQLLACVRHGVTAKLAAPFKPKDADLYVTVS
SFEAAYAAYAEHQSRMERYWCLRWLIQENKSQVQASVLKGDTVRLNDIPLTLIVLGLGPH
ARGTQIMLDVLSLDVVTLSISVRVAQVLGASQSGLGEDDDEGAGGAGEGGGGTMEAMGPQ
VATTRGGRRCRWRQRCGGGERHGKRRPRRKPG
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgaatattttttttgaggaatccggcggcttcaaggctggcacggtgttgtcgcagcaa
ggtgagtcgtaccaggtggagctgcccggtggacgccgcagcaagatcaaggggcgcgac
gtgctgctgcgtttcgagtcgccgtcgcccgcggagctgatgacgcaggcgcacgccgcc
gcacaggacatcgacatgagtttcctgtgggaatgcgcgcctgccgaggagttcgcgttc
ccggtgctcgctgccgagtacttcggcgaaggcgccggcgttgcgcaacaggccggactc
gcgctggcgctgcaggcctcgccggtgtacttccggcgaaaaggccgcggtcagtaccaa
cgcgcgccggaggaacaactgcaggccgcgctcgcgggactcgcccgcaagcagcagcag
gcggaattgcaggccgtgtatgccgatcaactgatcgccggcacgctgcccgacgcgctc
aggggcaaggaactgcagttgttgttccgtcccgacaagaacaccatcgagtggaaggcg
ctcgacgccgccgccatggcgctgggcaagacgcacgccgaggtgatgctcgcctgcggc
ggcatttcgtcgccgcgcgcgtatcacgaggcggcgttcctctacgaacacttcccgcgc
ggcacaggcttcccggaactcgggccgaccccggtgcccggcgacgatttgccgctggcc
gacgtgcaggcgttctccatcgacgattcgacgacgaccgagatcgacgacgccctctcg
gtacaggtactgcccgatgggctgttgcgtgtgggcatccacattgcggcgccggcactc
ggcattacgcggggtgatgccattgatgagatcgcgcgcgtgcgtctgtcgacggtctat
gcgccgggcgaaaagattacgatgctcccggatgcggtggtcgaggcgtacacgcttgcc
gagggcggcgcgcgtccggcactgtcgctgtacgtcgtggtcaaggccgacacgtacgag
atcgtggcgacggaaacgcatgccgagcgggtgccgatctcggcaaacctgcgtcacaac
gaactcgacgcgatcatcacggccgagacgctggccgatggcagcggcgagtatccgcac
aaggaagcgctgcggctgttgtggccgttcgcgcagtcgctctacgagaaacgtcaggcc
gcgcgcgtgggttatggcctgcgcccggaagtgcagaacaagaccgacttcaatttctac
gtcgaaggcgagcaggtcacgatcaagcagcgtatgcgcggtgcgccgctggatctgatc
gtcgccgagatggcgattctcgcgaacagccggtggggacgcctgctggccgaatgcggc
gtgcccggcatctaccgcgctcagcgtgcttacggcgtgaatcgcacgcgcatgcagact
tcgccggcgccgcacgagggcctgggcgtcgagcagtacgcatggagcacttctccgctg
cgtcgctatgtggatctggtcaaccagtggcagttgcttgcgtgtgtgcgtcacggcgtg
acggccaagctggcggcgcccttcaagccaaaggatgccgacctgtacgtgaccgtgtcg
agcttcgaagccgcctatgcggcttacgccgagcaccagagccggatggagcgctactgg
tgcctgcgctggttgattcaggagaacaagtcgcaggtgcaggcgagcgtgctcaagggc
gacaccgtgcggctgaacgacattccgctgacgctgatcgttctggggcttggcccgcac
gcgcgcggtacgcagatcatgctcgacgtgctctcgctcgatgtcgtcacgctcagcatc
tcggtacgtgtcgcgcaggtgctgggcgccagccagagcggactgggcgaagacgatgac
gaaggcgccggcggtgcaggcgaaggcggtgggggcacgatggaggcgatggggccgcag
gtggcgacgacgcgggggggacgacgatgccgatggcgccaacgatgcggagggggcgag
cgacacggtaagcgacgaccgcggcgaaagccagggtga
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