Pandoraea sp. XY-2: DRB87_20120
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Entry
DRB87_20120 CDS
T06086
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
pand
Pandoraea sp. XY-2
Pathway
pand00470
D-Amino acid metabolism
pand00550
Peptidoglycan biosynthesis
pand01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
pand00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
DRB87_20120
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
DRB87_20120
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
pand01011
]
DRB87_20120
Enzymes [BR:
pand01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
DRB87_20120
Peptidoglycan biosynthesis and degradation proteins [BR:
pand01011
]
Precursor biosynthesis
Amino acid ligase
DRB87_20120
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GFIT
Motif
Pfam:
Mur_ligase_M
Mur_ligase_C
MurD-like_N
2-Hacid_dh_C
AlaDh_PNT_C
Motif
Other DBs
NCBI-ProteinID:
QBC33173
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Position
complement(4438301..4439827)
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AA seq
508 aa
AA seq
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MFGEKFGESWQPRVLILGLGESGLAMARWCARYGCRVRAADTRFASSETPPNVLALRADA
AQAEFVGGAFGAQVDTLLADIELIGISPGLSPLAADVAALLTVAAERGIPVWGEIEFFAQ
ALRHMHATSGYAPKVLAITGTNGKTTTTSLTGLLCRRAGKRTAVAGNISPTALDRLSECI
ADATLPDVWVLELSSFQLEATHSLAPDAAAILNITQDHLDWHGDMDAYAKAKARIFGPQT
VRVLNRDDARVMSFATPEANVVTFGTGKPEAVGDFGLEMEGGMSWLVEGFSRDDAPPAPK
RRKAGAVEATLEVIGKRLMPADALRIRGQHNAANALAALALTRAIDLPMAKLLHGLREYP
GEPHRVQLVGAINEVEYYDDSKGTNVGATVAAINGLQKTLLLIVGGDGKGQDFSPLANPV
AHHARAVLLIGRDAPRLREALADTGVDLIDAPTLEAATRDAAKLAQPGDAVLLSPACASF
DMFRNYEHRAQVFRDTVVDLAADAGVML
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
gtgttcggcgagaagtttggtgaatcctggcaaccgcgtgtcctgatcctgggtctggga
gagtccggcctggcgatggcacgttggtgcgcgcgttacggctgccgtgtgcgggcggcc
gacacgcgctttgcgtcgtcggagacaccgccgaatgttctcgccttgcgtgccgacgcc
gcgcaggccgaattcgtcggcggtgcattcggggcccaggtcgacacgttgctcgccgac
atcgaactgatcggtatcagcccaggcctgtcgccgctcgccgccgatgtggcggcgctg
ctgacggtggcggccgagcggggcattcccgtgtggggcgagatcgaattcttcgcgcag
gcgctgcgccacatgcacgcgacgagcggctacgcgcccaaggtgctggccattaccggc
acgaacggcaagacgacgaccacgagtctgacggggttgctgtgccgtcgcgccggcaag
cgcacggcggtcgcgggcaatatcagtccgaccgcgctcgaccgtctgagcgaatgcatc
gccgacgccacgttgcccgatgtctgggtgcttgaactttccagctttcagctcgaggcc
acgcattccctcgcgcccgatgcggccgcgattctcaatatcacgcaggaccatctggac
tggcatggcgatatggacgcctatgccaaggccaaggcgcgcattttcggcccgcagacc
gttcgcgtgctcaaccgcgacgatgctcgcgtgatgagtttcgccacgcccgaggccaat
gtcgtgaccttcggcaccggcaagcccgaggctgtcggcgacttcggcctggagatggag
ggcgggatgtcgtggctggtcgagggcttctcgcgcgacgacgccccgccggcgccgaag
cggcgcaaggccggcgccgtggaggcgacgctcgaggtgatcggcaaacgcctcatgccc
gccgacgcgctgcgcatccgcggtcagcacaatgccgccaacgcgctggcggcgctcgcg
ctcacgcgcgccatcgacctgccgatggccaagctcttgcacggcttgcgcgaatacccg
ggcgagccgcatcgtgtgcagctcgtcggcgcgatcaacgaagtcgagtattacgacgac
agcaagggcaccaacgtgggcgcgacggtcgcggccatcaacggcctgcagaagacgttg
ctcctgatcgtcggcggcgacggcaaggggcaggacttctcgccgctggccaaccctgtg
gcgcatcacgcgcgcgccgtgttgctgatcggccgcgacgcgccgcggctgcgcgaagcg
ctggccgacacgggtgtcgatctgatcgatgccccgacgctcgaagccgccacgcgagac
gctgcgaagctggcccagccgggcgacgcggtgctgctctcgccggcctgcgcgagcttc
gacatgttccgcaactacgagcatcgcgcgcaagtgtttcgcgacaccgtggttgatctg
gccgccgacgcgggggtgatgctatga
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