Pandoraea sp. XY-2: DRB87_21525
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Entry
DRB87_21525 CDS
T06086
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pand
Pandoraea sp. XY-2
Pathway
pand03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pand00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DRB87_21525 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pand03021
]
DRB87_21525 (rpoC)
03400 DNA repair and recombination proteins [BR:
pand03400
]
DRB87_21525 (rpoC)
Enzymes [BR:
pand01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DRB87_21525 (rpoC)
Transcription machinery [BR:
pand03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DRB87_21525 (rpoC)
DNA repair and recombination proteins [BR:
pand03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DRB87_21525 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
ApbA_C
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
QBC33396
LinkDB
All DBs
Position
complement(4712222..4716433)
Genome browser
AA seq
1403 aa
AA seq
DB search
MKALLDLFKQVQQVEQFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVLEPGMTPLKRCQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRSIDIDQQVEHLRAELQATGSEAKIKKYAKRLKVLEAFQRSGIKPEWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIIVRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVITVGPT
LKLHQCGLPKLMALELFKPFIFHKLEVLGVATTIKAAKKEVENQTAVVWDILEDVIREHP
IMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATRDKINGRGEGLSFIDVSEVLRAYDNK
EVELASRVNVRITEYTVDPETGEKTAKITLYPTTVGRAILSEILPPGLPFSVLNKSLKKK
EISKLINTAFRRCGLRETVIFVDKLMQSGFRLATRAGISICVDDMLVPTKKEELIGEASK
KVKEYDRQYMSGLVTAQERYNNVVDIWGATGDAVGKAMMEQLSKEKTTDRDGNIVDQESF
NSIYMMADSGARGSSAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEALRDRI
LGRVAVADVVNPETQETVYESGTLLDEDAVEMIEALGVDEVRVRTPLTCDTRFGLCAACY
GRDLGRGSRVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSIEAKSNGTVR
FSATMRYVTNGRGEQIAISRSGEILITDDHGRERERHKVPYGATLLHLDGAQVKAGAQLG
TWDPLTRPIITEHGGYARFENVEEGVTVAKQIDDVTGLSTLVVIDPKRRGPASKNVRPQV
KLLDEHGVEVKIPGTDHAVTIGFQVGALITIKDGQQVPVGEVLARIPTEAQKTRDITGGL
PRVAELFEARAPKDAGILAEVTGTTSFGKDTKGKQRLVITDLDGNQHEFLIPKEKQVLVH
DGQVVNKGEMIVDGPADPHDILRLQGIEALARYIVDEVQDVYRLQGVKINDKHIEVIVRQ
MLRRVQITDNGDTRFIIGEQVERSDMLYENDAMNAADKRPAQYENVLLGITKASLSTDSF
ISAASFQETTRVLTEAAIMGKKDDLRGLKENVIVGRLIPAGTGLAYHKARKARETSDRER
HDQIALEEAFAPMPSSVEEPTAE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttgctcgatctattcaagcaagttcagcaggtcgaacagttcgacgcgatc
aagatcggtctggcttcgccggacaagatccgctcgtggtcgttcggcgaagtgaagaag
ccggaaacgatcaactatcggacgttcaagcccgagcgtgacggcctgttctgcgcaaag
atcttcggtccgatcaaggattacgagtgcctttgcggcaagtacaagcgcctgaagcat
cgcggcgtgatctgcgagaagtgcggcgtggaagtcacgctggcgaaggtgcgtcgcgag
cgcatgggccacatcgagctggcctcgccggtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgaacgcgtgctgtac
ttcgaagcgtatgtggttctcgaaccgggcatgacgccgctcaagcggtgccagatcatg
accgaagaggattactacaacaaggtcgaggaatacggcgacgaattccgtgccgagatg
ggcgcggaaggcgtgcgcgagctgctgcgctcgatcgacatcgaccagcaggtcgagcat
ctgcgcgccgagctgcaagccacgggctcggaagcgaagatcaagaagtacgccaagcgc
ctgaaggtgctcgaggctttccagcgttcgggcatcaagcccgagtggatggtgctcgaa
gtgctgccggtgctcccgcccgagctgcgcccgttggtgccgctcgacggtggccgcttc
gcgacctcggacctgaacgatctgtatcgccgcgtcatcaaccgtaacaaccgtctgaag
cgtctgctcgagctgaaggccccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaatccgtggactcgctgctcgacaacggtcgtcgcggcaaggcgatgaccggtgcgaac
aagcgcccgctcaagtcgctggccgacatgatcaagggcaagagcggtcgtttccgtcag
aacttgctgggtaagcgggtcgactactcgggccgttcggtgattaccgtgggcccgacg
ctcaagctgcatcagtgcggtctgccgaagctgatggcgctcgaactcttcaagccgttc
atcttccacaagctggaagtgttgggcgtggccacgaccatcaaggccgcgaagaaagaa
gtcgagaaccagacggcggtggtgtgggacatcctcgaagatgtgatccgcgaacacccg
atcatgctgaaccgcgcaccgacgctgcaccgcctggggattcaggcgttcgagccggtg
ctgatcgaaggcaaggcgatccagcttcacccgctggtttgcgcggcgttcaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagcgcagatggaagcg
cgtaccctgatgctggcctcgaacaacgtgttgttcccggccaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctgggtctgtactacgcgacccgcgacaagatcaacggc
cgcggcgaaggcctgtcgttcatcgacgtttcggaagtgctgcgcgcttacgataacaag
gaagtcgaactggcttcgcgcgtgaacgtgcgtatcacggagtacacggtcgatccggaa
acgggcgagaagacggcgaagatcacgctgtatccgaccacggtcggccgcgcgatcctg
tcggaaattctgccgccgggcctgccgttctcggtgctgaacaagtcgctcaagaagaag
gaaatctcgaagctcatcaacacggcgttccgccgctgcggtctgcgcgagacggtgatc
ttcgtcgacaagctgatgcagtcgggcttccgcctggcaacgcgtgccggtatctcgatc
tgcgtcgacgacatgctcgtgccgacgaagaaggaagagctgatcggcgaagcgtcgaag
aaggtcaaggaatacgaccgtcagtacatgtcgggtctggtcacggcgcaagagcgttac
aacaacgtcgtggacatctggggtgcgaccggcgacgccgtgggtaaggcgatgatggag
cagctctcgaaagagaagacgaccgatcgcgacggcaatatcgtcgaccaggaatcgttc
aactcgatttacatgatggccgactccggtgctcgcggttcgagcgcccagattcgccag
ctcgcgggtatgcgtggcctgatggccaagccggatggctcgattatcgagacgccgatt
accgcgaacttccgcgaaggcctgaacgtgttgcagtacttcatctcgacccacggtgca
cgtaagggtctggccgatacggcactgaagacggcaaactcgggttacctgacgcgtcgt
ctggtcgacgtgacgcaggatctggtcgtggtcgaagacgattgcggcacgagcaacggc
gttgcgatgaaggcactggtcgagggcggtgaagtggtcgaagccctgcgtgaccgtatc
ctgggtcgcgtggccgtggccgacgtcgtgaatccggaaacgcaagagacggtgtacgaa
tcgggcacgctgctcgacgaagacgccgtcgagatgatcgaagcgctgggtgtcgacgaa
gtgcgcgtgcgcacgccgctgacctgcgatacgcgcttcggtctgtgcgccgcctgttac
ggccgtgaccttggccgcggctcgcgtgtgaacgtgggcgaagcggtcggtgtgatcgct
gcgcagtcgatcggtgaaccgggcacgcagctcacgatgcgtacgttccacatcggtggc
gcggcatcgcgtgcggccgtggcctcgtcgatcgaagccaagtcgaacggtacggttcgc
ttctcggcgaccatgcgttacgtgacgaacggtcgcggcgaacagatcgccatctcgcgt
tcgggcgaaatcctgatcacggacgatcatggccgtgagcgcgagcgccacaaggtgccg
tatggcgccacgctgctgcatctggacggcgcacaggtcaaggccggtgcccaactgggt
acgtgggatccgctgacgcgcccgatcattaccgaacacggcggttacgcccggttcgag
aacgtcgaggaaggtgtcacggtggccaagcagatcgacgatgtgacgggtctgtccacg
ctggtcgtgatcgatccgaagcgtcgtggtccggcgtcgaagaacgtgcgtccgcaggtc
aagctgctcgacgaacatggtgtggaagtgaagatcccggggaccgatcacgcagtgacg
atcggcttccaggtgggcgcactgatcaccatcaaggacggccagcaagtgccggtgggt
gaagtgctcgcacgtatcccgaccgaagcgcagaagactcgcgatattaccgggggtctg
ccgcgtgtggccgaactgttcgaagcgcgcgcaccgaaggacgccggcattctggccgaa
gtcaccggtaccacgtcgttcggcaaggacacgaagggcaagcagcgtctggtcattacc
gatctcgacggcaaccagcacgagttcctgattccgaaggaaaagcaggtgctggtgcac
gacggccaggtggtgaacaagggcgaaatgatcgtggacggtccggccgacccgcacgac
atcctgcgtctgcagggtatcgaagcgctggcgcgttacatcgtcgacgaagtgcaggac
gtgtaccgcttgcagggtgtgaagatcaacgacaagcacatcgaggtgatcgttcgccag
atgctgcgtcgtgtgcagatcaccgacaacggcgatacgcgcttcatcatcggcgaacag
gtcgagcgctcggacatgctgtacgagaacgacgccatgaacgccgcggacaagcgtccg
gcgcagtacgagaacgtgttgctggggattacgaaggcgtcgctgtcgacggattcgttc
atctcggcggcctcgttccaggaaacgacgcgcgtgttgaccgaagccgcgatcatgggc
aagaaggacgacctgcgtggcttgaaggaaaacgtcatcgttggccgtctcatcccggca
ggtacgggtctggcgtatcacaaggctcgcaaggcccgcgagacgtcggatcgcgagcgt
cacgaccagatcgctctggaagaggcgtttgcaccgatgccaagctcggtggaagagcct
acggcggagtaa
DBGET
integrated database retrieval system
