Pantoea sp. X85: P6287_06175
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Entry
P6287_06175 CDS
T10770
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pane Pantoea sp. X85
Pathway
pane03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pane00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P6287_06175 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pane03019
]
P6287_06175 (rhlE)
Enzymes [BR:
pane01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
P6287_06175 (rhlE)
Messenger RNA biogenesis [BR:
pane03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
P6287_06175 (rhlE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
AAA_22
Cullin_binding
Motif
Other DBs
NCBI-ProteinID:
WFL68653
LinkDB
All DBs
Position
1330285..1331673
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AA seq
462 aa
AA seq
DB search
MSFDSLGLSADILRAVAEQGYQEPTPIQRQAIPVVLAGRDLLASAQTGTGKTAGFTLPLL
QRLTAKPSTARGRRPVRALILTPTRELAAQVGENVREYSQYLDIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLAHQNAVDLSQVEILVLDEADRMLDMGFIHDIRRVLARLPAK
RQNLLFSATFSDEIKTLAEKLLTNPEQVEVARRNTASEQVSQQVHFVDKKRKRELLSLMI
GRDNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALADFKSGGIRVLV
ATDIAARGLDIEELPHVVNYELPNVAEDYVHRIGRTGRAAATGAALSLVCVDEHKLLRDI
ERLLKREIPRIELPGFEVDPSIKAEPIQNGRQQQGGGRGQGGRGQGQGRGQGGNVSRPHS
GNAPRPQGEARSARRPAQGASQAAPAANSGRRRPAPKKTGNA
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttgactctctcggcttaagtgccgatattttgcgtgcggtagcagaacaaggc
taccaagagccgacgccgattcagcgtcaggccattcctgtggtgctggctggtcgtgac
ctgctggcgagcgcccaaaccggcaccggtaaaaccgccggctttacgctgccgttgctg
cagcgtctgactgcaaaaccgtccacggcgcgtggccgccgcccggtgcgtgcgttgatc
ctgaccccgacccgcgaactggcggctcaggttggcgagaacgtgcgtgagtacagccaa
tatctcgatatccgttcgctggtggtatttggcggcgtgagcatcaacccgcagatgatg
aaactgcgcggcggcgttgacgtgctggtggcgacaccgggccgtctgctcgatctggcg
caccagaacgcggttgatctgtcacaggttgaaatcctcgtgctggatgaagcggatcgt
atgctcgatatgggcttcatccacgacatccgtcgcgtgctggcgcgtctgcctgctaag
cgtcagaacctgctgttctctgccaccttctctgacgagatcaaaacgctggcggaaaaa
ctgcttaccaacccagaacaggttgaagttgcgcgtcgtaacaccgcctctgagcaagtt
tcacagcaagtgcatttcgtggataagaagcgcaagcgggaactgctgtcgctgatgatt
ggtcgtgataactggcagcaagtgctggtgttcacccgtaccaaacacggcgccaatcat
ctggctgagcagctgaacaaagacggcattaccgccgccgcgatccacggcaacaagagc
cagggcgcgcgtacccgtgcattggctgacttcaaatccggcggcattcgcgtgctggtc
gcgaccgacatcgcggcgcgtggtctggatatcgaagagctgccacacgtggtgaactac
gagctgccaaacgtggcggaagattacgtgcaccgtatcggtcgtaccggccgtgcggct
gctaccggcgcggcactgtcgctggtgtgtgttgatgaacacaaactgctgcgtgacatt
gagcgtctgctgaagcgtgaaatcccgcgcatcgagctgcctggttttgaagtcgatccc
agcatcaaagccgagccaatccagaacggtcgtcagcagcagggcggcggtcgcggtcaa
ggtggacgtggtcaaggccagggtcgcggtcagggcggcaacgtttctcgcccgcatagc
ggcaatgcgccacgtccgcagggtgaagcgcgttccgcgcgtcgtccagcgcagggcgca
agccaggctgcgccagccgccaacagcggtcgtcgtcgtccggcgccaaagaaaaccggg
aacgcctaa
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