Pantoea sp. X85: P6287_07580
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Entry
P6287_07580 CDS
T10770
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pane Pantoea sp. X85
Pathway
pane03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pane00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P6287_07580 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pane03019
]
P6287_07580 (rne)
03009 Ribosome biogenesis [BR:
pane03009
]
P6287_07580 (rne)
Enzymes [BR:
pane01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
P6287_07580 (rne)
Messenger RNA biogenesis [BR:
pane03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P6287_07580 (rne)
Ribosome biogenesis [BR:
pane03009
]
Prokaryotic type
rRNA processing factors
P6287_07580 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
WFL68908
LinkDB
All DBs
Position
complement(1632201..1635464)
Genome browser
AA seq
1087 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEISREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSALELPDGMGLIVRTAGVGKSAESL
QWDLSFRMKHWEAIKKAADSRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAYNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLS
LSILRLIEEEALKDNTKEVHAIVPVQVASYLLNEKRDAVSAIEKRQGGVRAIIVPNDQME
TPHYSVLRVRTGEETQTLSYHLPKLHEAEMALPSEEEHAERRRPEQPALAAFAMPDAPPA
PVEVVKESQPAAEVKTKPAVAAPAVTQTGFVARLLSGLKKLFAGDAPAAAPAETKQETPA
VVAAESENTQQRGERRNNNNRRNNRRERTPRNGENGQVREGREPREPREAREPREAREPR
DNQDNRRNKRQNEPREARPVLSDEALEQRDEQQQQRREQRADRQRRRQEEKRAQQQDQKA
AEPVVQAPAVDENVEHEEERVQVMPRRKQRQLSQRVRVGETPDITVEAPVVHDAAVETAP
RAQYKEHPEASNDEQDDSDNRDSANMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSAMPL
ESAAASPEMASGKVWISYPVAQAQEEYSTQDAMHEVSDYGYQQTPDAETQPAAAVEPAVE
QVAAEEAVHQVEPQAHTDVPVVNTDDVTPIAAPVNEEPSVISAADEQVAQETAAEAEPAA
VAEEAKPEVSEVAAVAEQAPIDVSPAVEAQVEDVLAAPVAAEAEVTPVTEPHAPVAARDT
AVTTVETRFKHHATAPMTKAPAPAWEPEPVRNSDWVRPAFGFEGRGSAGGHSATHQATAP
ATRPESA
NT seq
3264 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaattaacgcaactcagcaggaggagttgcgcgttgccctggttgat
ggacaacgtctgtacgatctggatattgaaagtcctggacacgaacagaaaaaagccaac
atatacaaaggtaaaatcacccgcgttgaacccagccttgaagctgcatttgtcgattat
ggtgcagaacgtcacggtttcctccctctgaaagaaatttcccgcgaatacttccccgcc
aattacaacgcacatggtcgtccgaatatcaaagatgtgctgcgtgaaggccaggaagtt
atcgttcaaattgataaagaggaacgcggtaataaaggtgcagcactcaccacctttatt
tccctggccggtagctatctggtattgatgccgaacaacccacgtgccggtggtatttca
cgccgcattgagggcgacgaccgtaccgaattaaaagaagcactttccgcactggaactt
ccagacggcatgggattgatcgtccgcactgcgggcgtgggtaaatctgccgaatcactg
cagtgggatctcagcttccgtatgaagcactgggaagccattaagaaagccgcagacagc
cgcccagcgcctttcctgatccatcaggaaagcaacgttatcgtgcgcgccttccgcgac
tatctgcgtcaggatatcggtgaaatccttatcgataatccaaaagtactggaactggcc
cgtcagcacattgctgcactgggtcgtccggacttcagcagcaaaatcaaactctacacc
ggtgaaatcccgctgttcagccactaccaaatcgaatcgcagattgaatccgcctttcag
cgtgaagtgcgtctgccatcaggcggatcgattgttatcgatagcaccgaagccctgacg
gcgattgatatcaactccgcacgcgctactcgcggcggtgatatcgaagaaaccgcgtac
aacaccaacctggaagcggccgatgagattgctcgccaattgcgtctgcgcgatctcggc
ggcctgattgttatcgacttcatcgacatgacgccagtgcgccaccagcgcgcggtggaa
aatcgtctgcgtgaggcggtacgtcaggatcgtgcgcgtattcagatcagccacatttca
cgcttcggcttgctggagatgtcgcgtcagcgtctgagcccgtcactgggtgaatccagc
catcacgtctgcccacgctgcagcggaaccggcaccatccgtgataacgaatcgctgtcg
ctgtctattctgcgtctgattgaagaagaagcgctgaaagacaacaccaaagaagtgcat
gccattgttccggttcaggtcgcctcttacctgctgaacgaaaagcgtgatgccgttagc
gccatcgaaaaacgccagggcggtgtgcgtgccatcatcgtgccaaacgatcagatggaa
acgccacactactcggtactgcgtgttcgtactggcgaagagacgcaaacgctgagctat
cacttaccgaaactgcacgaagcggaaatggcgctgccttctgaagaagagcacgctgag
cgtcgtcgtccggagcagccagctctggccgccttcgcgatgcctgatgcgccgcctgcg
ccggttgaagtggtgaaagagtctcagccagcggcagaagtgaaaaccaaaccagcagtt
gctgcgcctgcggtaactcaaactggtttcgtggctcgcctgctgagtggcttgaagaaa
ctgtttgccggtgatgcacctgctgcggcgcctgctgaaactaagcaggaaaccccagcc
gttgttgccgctgaatctgaaaacacccagcagcgtggcgaacgtcgtaacaataacaac
cgtcgcaacaaccgtcgtgaacgtacgccgcgtaatggcgagaacggtcaggtgcgcgaa
ggtcgtgaaccgcgcgagccgcgtgaagcacgtgagccacgtgaagcccgcgaaccgcgt
gataatcaggacaaccgtcgtaacaagcgtcagaacgagccgcgtgaagcgcgtccagtg
ctgagcgatgaagcgcttgagcaacgtgacgagcagcagcaacagcgccgcgaacagcgt
gccgatcgccagcgtcgtcgtcaggaagaaaaacgtgctcagcagcaggatcagaaagcc
gctgaaccggttgttcaggcgcctgcggttgacgaaaacgttgagcacgaagaagaacgc
gttcaggtcatgccgcgtcgtaagcagcgtcagctgtcacagcgcgtgcgtgttggcgaa
acgcctgacatcactgtcgaagcgccggtggttcatgatgctgccgttgaaactgcgccg
cgtgctcagtacaaagagcatcctgaagccagcaatgacgagcaagatgatagcgataac
cgtgatagcgccaatatgccgcgccgttcacgtcgttcaccgcgtcatctgcgcgtaagc
ggtcagcgtcgtcgtcgctatcgtgacgagcgttacccaacgcagtctgcaatgccgctg
gaatctgctgctgcttcaccagaaatggcgtcaggcaaagtgtggatctcttacccggtt
gcgcaagcgcaggaagagtacagcacgcaagatgcgatgcatgaagtgtcggattacggt
taccagcaaacaccggatgccgagactcaacccgctgccgctgttgaaccggccgttgag
caggttgccgctgaagaagccgtacatcaggttgaaccgcaggcgcacaccgatgtgccc
gtggtgaatacggatgacgtcacgccgattgccgcgcccgttaacgaagagccatcagtg
atctctgctgctgacgaacaggttgcacaggaaaccgcggctgaagcggaaccggctgcc
gtggctgaagaagcgaagcctgaagtaagcgaagtggctgcagttgctgaacaggcgccg
atcgatgtatcgccagcagttgaagctcaggttgaagacgtgctggctgcgccagtcgcc
gctgaagccgaagtcacgccagtcactgaacctcatgcgccggttgcggcacgtgatacc
gcagtaaccacggttgagacgcgcttcaagcatcacgctaccgcaccgatgaccaaagca
ccggcaccggcgtgggaacctgaaccggttcgcaacagcgactgggtccgtccagccttt
ggcttcgagggccgcggctcagccggtggtcacagcgcgacgcatcaggcaaccgcaccg
gcaacccgtccggaaagcgcgtaa
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