Pantoea sp. X85: P6287_10200
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Entry
P6287_10200 CDS
T10770
Symbol
pdeR
Name
(GenBank) cyclic di-GMP phosphodiesterase
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
pane Pantoea sp. X85
Pathway
pane02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
pane00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
P6287_10200 (pdeR)
Enzymes [BR:
pane01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
P6287_10200 (pdeR)
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GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS
PAS_4
PAS_8
GGDEF_2
PAS_10
RIP
Motif
Other DBs
NCBI-ProteinID:
WFL65761
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All DBs
Position
2196112..2198097
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AA seq
661 aa
AA seq
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MTDEQGQTLLYTLFGTTSPHWRLTSDSDALHFAEDENANTNMAVPLTPAQASLLRAMTVI
TSSINLTLSLHGEPVPMHFVGRKVNQSTWAGTSSAWGDTSSVARDLTLGLSFAEQVVSEA
NSVIVILDQRGNIQRFNRLSEEYTGLKEQEVIGRNVFQLFMTKQEAQASRRNIAGFFREG
SSYEVERWIKTRKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRVLANTD
TVTGLPNRNAIHQQISLALELANGSQTGVVYLDLDNFKKVNDAYGHMFGDQLLQAVSLAI
LSCLGKDQTLARLGGDEFVVLAEHTSQAALEAMASRILERLRQPFRIGLIEVYSGCSLGI
ALAPLHGEDRESLIRNADTAMYHAKENGRGKFCVFANEMNQRVFEYLWLDTNLRKALELD
HLVVHYQPKLNAEGEVLSAEALVRWNSPERGLVPPGDFISYAEESGLIVPLGRWVMLNVL
QQIIKWRSEGIFLRVAVNVSAKQLIDQSIYTDLKQALNEAGLTDCPIDIELTESCLIENE
AGALMLMKQFQELGAQVHLDDFGTGYSSLSQLARVPIDAIKLDQSFVRNINKQPVAQSLV
RAIVAVAKALKLQVIAEGIETKAEEKFVMANGVDGRQGYYYAKPMPAEQLGHWLAKHPAR
V
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgaacaagggcaaacattgctatataccttgtttggcaccaccagccctcat
tggcgtttaacttcagatagtgatgctctgcattttgccgaagatgagaacgcaaacacc
aatatggcggtgccgctgactcccgcacaagccagtttattacgtgcgatgacggtcatt
acctcaagtattaacctcacgctgtcgctgcatggcgaacctgttccgatgcattttgtc
ggccgtaaagtcaatcaatctacctgggcaggcacctcgtcagcctggggcgatacgtcg
tctgtcgcgcgcgatttgacgctgggtttatccttcgccgagcaagtggtttctgaggcg
aattccgtcatcgtgatcctcgatcaacgcggcaatatccagcgtttcaaccgtttgagt
gaagagtacaccgggctgaaagagcaggaagtgattggccgcaacgtattccagctgttt
atgaccaagcaggaagcgcaggcatcacgccgtaatatcgccggtttcttccgtgaaggc
agttcttacgaagttgaacgctggataaaaacccgtaaaggtcagcgactgtttctgttt
cgtaataagttcgttcacagcggcagcgggaaaaatgaaattttcctcatctgttccgga
accgacataaccgaagagcgccgcgctcaggaacgtctgcgcgtgctggccaataccgat
accgtcaccggcttgcccaatcgcaacgcgatccatcagcagattagtctggcactggag
ctggcgaatggcagtcagaccggtgtggtgtacctcgatttagacaattttaagaaggta
aatgacgcttacggccatatgtttggcgatcagctgttgcaagccgtgtcgctggccatc
ctcagctgtcttggcaaagaccagacgctggcgcgccttggcggcgatgagttcgtggtg
ctggcggaacacaccagccaggcagcgctggaagcgatggcgtcgcgtattcttgagcgg
ctgcgtcagccattccgcattggcctgattgaggtttacagcggctgctcgctgggtatc
gccctcgccccgctgcatggtgaagatcgtgaaagcctgattcgtaacgccgataccgcg
atgtatcacgccaaagaaaacggccgcggcaaattttgcgtgttcgctaatgagatgaat
cagcgcgtgtttgaatatctgtggctcgataccaacctgcgcaaagcgctcgagctggat
catctggtggtgcactaccagccaaaactcaatgccgaaggcgaagtgctgagcgccgaa
gcgctggtgcgctggaattctccagagcgtggtctggtgccgccgggcgattttatctcc
tacgccgaagagtccggtttgattgtgcccctgggccgctgggtgatgctcaacgtgctg
cagcagatcattaagtggcgcagcgaaggcatctttctgcgcgtcgcggttaacgtctcg
gctaagcagctgatcgaccagagcatttacaccgatctgaaacaggcattgaatgaagcc
ggtttgaccgattgtccgattgatatcgaactgacggaaagctgtctgattgagaatgaa
gccggtgcgctgatgctgatgaaacagttccaggagctgggtgcgcaagtgcatctcgat
gactttggtaccggttactcctcactttctcaactggcgcgcgtcccgattgatgccatt
aagctggatcagagctttgtacgtaatatcaacaaacaacccgtggcgcagtcgctggtg
cgtgcgattgtcgcggtggccaaagccctgaagctgcaggtgatcgccgagggcattgaa
accaaagccgaagagaagtttgttatggccaacggtgtcgatgggcgtcaaggttattat
tatgcaaaaccaatgcccgcagaacagctcgggcattggctggctaagcatcctgcccgc
gtttaa
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