Pantoea sp. X85: P6287_15275
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Entry
P6287_15275 CDS
T10770
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pane Pantoea sp. X85
Brite
KEGG Orthology (KO) [BR:
pane00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pane03009
]
P6287_15275 (rlmD)
Enzymes [BR:
pane01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
P6287_15275 (rlmD)
Ribosome biogenesis [BR:
pane03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
P6287_15275 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
PCMT
Methyltransf_25
RrnaAD
MTS
Cons_hypoth95
Methyltransf_4
Methyltransf_23
Methyltransf_11
TRM5-TYW2_MTfase
Ribosomal_L22
Methyltr_RsmB-F
Methyltransf_15
DOT1
Motif
Other DBs
NCBI-ProteinID:
WFL66702
LinkDB
All DBs
Position
complement(3263858..3265174)
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AA seq
438 aa
AA seq
DB search
MAQFYSAKQRVTTKARISVTIEDLDPFGQGVARHKGKAMFVSGALPGEQAEVTVFEDKSK
YARAKANKIINPSPQRETPRCVHFGVCGGCQQQHASVALQQESKARALSRMLSREAPLPV
KVDEIISGSAWGYRRRARLGLQWQPKQQRLQMGFRQAASNDLVELKQCPVLVPELEALLQ
PLHQCLSDLQAVKRLGHVELVLADNGPLMVLRHLDALSAGDRAKLERFSHEQQLSLYLAD
GSESLLALNAREPFYHSLNLPLSFSPQNFIQVNDGVNQQMVAKAIQWLDLQPEDRVLDLF
CGMGNFTLPLGKFVQNVVGVEGVAALVQQAAYNAEQTNLKNVRFFQHNLEEDVSRQPWAT
QGFNKVLLDPARAGAAGVMAHVVKLAPQRVVYVSCNPTTLARDSQTLLSAGYHLERVAML
DMFPHTSHLESMVLFSKA
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattttactccgcaaaacagcgtgtgacgacgaaggctcgcatatccgtcacc
attgaagacctcgatcctttcggacaaggtgttgcgcgccataaaggcaaggcgatgttt
gttagcggcgcgctgcccggtgaacaggcggaagtgacggtgttcgaggataaaagcaaa
tacgcacgcgccaaagccaacaagatcattaatcccagtccacagcgggaaacaccgcgc
tgcgtccattttggcgtgtgcggcggctgccagcagcaacatgcctcggtggctttgcag
caggagagtaaagcgcgcgccttgagccgcatgttaagccgcgaagcgccgctgccggtg
aaggtcgatgagatcatcagcggcagcgcgtggggctaccgtcgccgggcgcgtttagga
ttgcagtggcagccaaaacagcagcgtttgcaaatggggttccgtcaggccgccagcaac
gatctggttgaactgaagcaatgcccggttttggtgcccgaacttgaagcgttgctgcag
ccgctgcaccagtgcctcagcgatttacaggcagttaaacggttaggccacgtagaattg
gtgctggcggataatggcccgctgatggtactgcgtcatcttgatgcattatctgcaggc
gatcgcgcaaaactggaacgcttttcgcatgagcagcaactgtcgctctatctggctgat
ggcagtgaaagtttgctggcgctgaatgcgcgcgaacctttttatcactcgttgaatttg
ccactatcctttagcccgcagaattttattcaggtcaacgatggtgtgaatcagcagatg
gtcgccaaagccattcaatggctggatttgcagccagaggatcgtgtgttggatttgttc
tgcggcatgggaaactttaccttgccattaggaaagttcgtacaaaatgttgtaggtgtg
gagggcgttgcagcattagtgcagcaggcagcgtataatgctgagcagactaatctcaag
aatgttcgctttttccagcataacctggaggaagatgtatcgcgtcagccgtgggcgacg
cagggatttaacaaggtgttactggatccagcgcgtgctggggccgcgggcgtaatggcg
catgtggttaaacttgcgccgcaacgtgtggtctatgtttcctgtaaccctacaacgctg
gcgcgtgacagtcagacattgctgtcagcgggctaccatttggaaagggtcgcgatgctg
gatatgtttccccataccagtcatctcgaatccatggtgctgtttagcaaagcataa
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