Pseudooceanicola antarcticus: PspS2H3_01040
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Entry
PspS2H3_01040 CDS
T12011
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
panf Pseudooceanicola antarcticus
Pathway
panf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
panf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PspS2H3_01040 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
panf03021
]
PspS2H3_01040 (rpoB)
03400 DNA repair and recombination proteins [BR:
panf03400
]
PspS2H3_01040 (rpoB)
Enzymes [BR:
panf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PspS2H3_01040 (rpoB)
Transcription machinery [BR:
panf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PspS2H3_01040 (rpoB)
DNA repair and recombination proteins [BR:
panf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PspS2H3_01040 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
BGE90769
LinkDB
All DBs
Position
119626..123762
Genome browser
AA seq
1378 aa
AA seq
DB search
MAQTYLGQKRLRKYYGKIREVLEMPNLIEVQKSSYELFLKSGDQLDPMDGEGIKGVFQSV
FPIKDFNETAVLEFVKYELEKPKYDVEECMQRDMTYSAPLKVTLRLIVFDIDEDTGAKSV
KDIKEQDVFMGDMPLMTPNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAC
RIIPYRGSWLDFEFDAKDIVFARIDRRRKLPVTTLLYALGLDQEAIMDAYYNTVDYTYRR
GQGWVTKFFPERVRGTRPTYDLVDADSGEVIAEAGKKITPRAVKKLIDEGSVTSLLVPHD
RIVGKFVARDMINEDNGAIYVEAGDELTVEYDKEGEIIGGTLKDLLDAGFTEIPVLDIDN
INVGPYMRNTMAADKNMNRESALMDIYRVMRPGEPPTVEAASSLFDTLFFDSERYDLSAV
GRVKMNMRLALEKPDTQRTLDREDIVQCIKALVELRDGKGEIDDIDHLGNRRVRSVGELM
ENQYRVGLLRMERAIKERMSSVEIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNP
LSEVTHKRRLSALGPGGLTRERAGFEVRDVHATHYGRMCPIETPEGPNIGLINSLATFAR
VNKYGFIETPYRTVKDKQVTDEVHYMSATEEQRHVVAQANASLDEEGRFTNEMVNTRQAG
EYTLTPTEAVDLIDVSPKQLVSVGASLIPYLENDDANRALMGANMQRQAVPLLRAEAPVV
GTGIEGKVAIDSGAAIQAKRAGIIDQVDAQRIVIRATEDLELGDAGVDIYRMRKFQRSNQ
NTAINQRPLVKVGDKVTKGEVIADGPSTDMGELALGKNIVVAFMPWNGYNYEDSILISER
IARDDVFTSIHIEEFEVAARDTKLGPEEITRDIPNVGEEALRNLDEAGIVYIGADVEPGD
ILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRVKPGDYGTVVEVRVFNRHGVEK
DERALQIEREEVERLSRDRDDELAILDRNIYARLKDMILGKTAVKGPKGVKAGSEITEDL
LSQLSRGQWWQLALEDDKEAQIVEALNEQYEVQKRALDARFEDKVEKVRRGDDLPPGVMK
MVKVFIAVKRKLQPGDKMAGRHGNKGVVSRVVPMEDMPFLADGTPVDFCLNPLGVPSRMN
VGQILETHTGWAQRALGLKVDEALQDYRRSGDLTPVRDAMRLAYGDDVYEEGIAGMEEDQ
LLEAAGNVTGGVPVATPVFDGAKEADINDALSRAGFDESGQSVLFDGRTGEQFSRKVTVG
FKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQ
EMLTVKSDDVAGRTKVYESIVKGEDNFEAGVPESFNVLVKEVRGLGLNMELLDAEDEE
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atggctcagacctatcttggtcagaaacgtcttcgcaaatactacggcaagattcgcgaa
gtccttgaaatgccgaaccttatcgaggttcagaaaagctcttacgaactcttcctgaag
tctggcgaccagcttgacccgatggatggcgaaggcatcaagggtgtcttccagtcggtc
ttcccgatcaaggatttcaacgagaccgcggttctggagttcgtcaagtacgagctggag
aagcccaagtacgacgttgaagaatgcatgcagcgcgacatgacctacagcgcgccgctg
aaggttaccctgcgcctgatcgtctttgatatcgacgaggataccggggccaagtcggtc
aaggacatcaaggaacaggacgtcttcatgggcgacatgcccctgatgaccccgaacggt
acgttcatcgtgaacggcaccgagcgcgtgatcgtgtcccagatgcaccgctcgcccggc
gtgttcttcgaccacgacaagggcaagacccattcctcgggcaagcttctcttcgcctgc
cggatcatcccctaccgcggctcctggctggacttcgagttcgacgccaaggacatcgtg
ttcgcccgcatcgaccgtcgccgcaagctgcccgtcaccacgctcctctacgccctgggt
ctcgaccaggaagcgatcatggacgcctattacaacacggtggattacacctaccgtcgc
ggccagggctgggtgaccaagttcttccccgagcgcgtgcgtggcacccgcccgacctac
gacctggtcgacgccgattccggcgaagtgatcgccgaggccggcaagaagatcaccccg
cgcgccgtcaagaagctgatcgacgagggctccgtcaccagcctgctggtgccgcacgac
cgtatcgtcggcaagttcgtcgcccgtgacatgatcaacgaggacaacggcgccatctac
gtggaagccggtgacgagctgaccgtggaatacgacaaggaaggcgagatcatcggcggt
acgctgaaggatctgctggacgcaggcttcaccgagatccccgtgctggacatcgacaac
atcaatgtcggtccctacatgcgcaacaccatggcggcggacaagaacatgaaccgcgag
agcgcgctcatggacatctaccgcgtgatgcgtcccggcgagccgccgaccgtcgaagcg
gcttcgtcgctcttcgacaccctgttcttcgacagcgagcgctacgacctctcggccgtg
ggtcgtgtgaagatgaacatgcgcctggcgctcgaaaagcccgacacccagcggaccctc
gaccgcgaggacatcgtccagtgcatcaaggccctggtcgagctgcgtgacggcaagggc
gagatcgacgacatcgaccacctgggcaaccgtcgcgtccgttccgtcggcgagctgatg
gaaaaccagtaccgcgtcggcctgctgcgcatggagcgcgccatcaaggagcgcatgtct
agcgtcgagatcgacacggtgatgccgcaggacctgatcaacgccaagccggcggctgct
gctgtccgcgaattcttcggctcttcgcagctgtcgcagttcatggaccagaccaacccg
ctgtcggaagtgacgcacaagcgtcgtctgtcggcgcttggaccgggcggcctgacccgc
gaacgcgcaggcttcgaggtgcgcgacgttcacgccacgcactacggccgtatgtgcccg
attgaaacgccggaaggcccgaacatcggcctgatcaactcgctggcgaccttcgcccgc
gtgaacaagtacggcttcatcgagaccccctaccgcaccgtcaaggacaagcaggtgacc
gacgaggtccactacatgtccgcgacggaagagcagcgtcacgttgtggcccaggccaac
gcctcgctcgacgaagagggccgtttcaccaacgagatggtcaacacccgtcaggctggt
gaatacacgctgaccccgaccgaagccgtcgacctgatcgacgtttcgccgaagcagctg
gtctctgtcggtgcctcgctcattccctacctggaaaacgacgatgctaaccgcgccctg
atgggtgcgaacatgcagcgtcaggcggttccgctgctgcgcgccgaggcgccggttgtc
ggtacgggtatcgaaggcaaggtcgccatcgactccggtgcggcgatccaggccaagcgg
gccggtatcatcgaccaggtcgatgcacagcgtatcgtgatccgcgccaccgaggatctc
gagctgggcgatgccggcgtcgacatctaccggatgcgcaagttccagcgctcgaaccag
aacaccgccatcaaccagcgtccgctggtgaaggtgggtgacaaggtgaccaagggcgaa
gtgatcgccgacggcccgtccaccgacatgggtgaactggcgctcggcaagaacatcgtc
gtcgccttcatgccctggaatggctacaactacgaagactccatcctgatctccgagcgt
atcgcacgtgacgacgtcttcacctcgatccacatcgaggaattcgaagtcgccgcccgt
gacaccaagctcgggccggaagagatcacccgcgacatccccaacgtcggcgaggaagcc
ctgcgcaacctcgacgaggcgggcatcgtctacatcggtgccgatgtggagccgggcgac
atccttgtcggcaagatcactccgaagggcgaaagcccgatgacgccggaagaaaagctt
ctgcgcgccatcttcggcgagaaggcttccgacgtgcgcgatacctcgctgcgggtgaag
ccgggcgattacggtaccgtcgtggaagtccgcgtcttcaaccgtcacggcgtcgagaag
gacgaacgtgcgctgcagatcgagcgtgaggaagtcgaacgcctgtcgcgtgaccgcgac
gacgaactggcgatcctcgaccgcaacatctacgcgcgtctcaaggacatgatcctcggc
aagaccgcggtgaagggtccgaagggcgtcaaggccggctccgagatcaccgaggacctg
ctgtcgcagctctcgcgtggtcagtggtggcagctggcgctggaagacgacaaggaagcc
cagatcgtcgaggccctgaacgagcagtacgaggtgcagaagcgcgccctggatgcccgt
ttcgaggacaaggtcgagaaggtgcgccgtggcgacgacctgcccccgggtgtcatgaag
atggtcaaggtcttcatcgccgtgaagcgcaagcttcagccgggcgacaagatggccggc
cgtcacggcaacaagggtgttgtctcgcgcgtggtgccgatggaagacatgccgttcctg
gcagacggtacccccgtcgacttctgtctgaaccctctgggtgtgccgtcgcgtatgaac
gtcggtcagatcctcgaaacccacaccggctgggcgcagcgcgcgcttggtctgaaggtg
gacgaggccctgcaggactaccgccgcagcggtgacctgaccccggtccgtgacgcgatg
cgcctggcctatggcgatgatgtctacgaagaaggcattgccggcatggaagaggaccag
ctgctggaagcggcaggcaatgtcaccggcggtgtgccggttgcaacgccggtcttcgac
ggtgccaaggaagccgacatcaacgacgcgctcagccgcgccggtttcgacgagagcggc
cagtccgtgctcttcgatggccgcacgggcgagcagttctcgcgcaaggtcaccgtgggc
ttcaagtacctgctgaagctgcatcacctggtcgacgacaagatccacgcccgttccacc
ggcccgtactcgctggtcacccagcagccgcttggtggtaaggcgcagttcggcggtcag
cgcttcggtgagatggaggtctgggccctggaagcctatggcgccgcctacaccctgcag
gagatgctgacggtgaagtcggatgacgttgccggccggaccaaggtctacgagagcatc
gtcaagggcgaggacaacttcgaggccggcgtgcccgagagcttcaacgttctcgtgaag
gaagtccgcggcctcggcctgaacatggaactcctggatgcggaggacgaggaataa
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