Pseudooceanicola antarcticus: PspS2H3_36290
Help
Entry
PspS2H3_36290 CDS
T12011
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
panf Pseudooceanicola antarcticus
Pathway
panf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
panf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PspS2H3_36290 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
panf03021
]
PspS2H3_36290 (rho)
03019 Messenger RNA biogenesis [BR:
panf03019
]
PspS2H3_36290 (rho)
Transcription machinery [BR:
panf03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
PspS2H3_36290 (rho)
Messenger RNA biogenesis [BR:
panf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PspS2H3_36290 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
AAA_22
NACHT
OB_RNB
AAA_25
ATPase_2
AAA
Motif
Other DBs
NCBI-ProteinID:
BGE94294
LinkDB
All DBs
Position
complement(3825518..3826789)
Genome browser
AA seq
423 aa
AA seq
DB search
MTENRLNLSDLKAKSPKDLLAMAEELEIENASTMRKGEMMFQILRELADDDWQVGGDGVL
EVLQDGFGFLRSPEANYLPGPDDIYVSPDMIRQFSLRTGDTVEGLMKAPDDNERYFALTT
VSSINFQEPEKAKHKIAFDNLTPLYPDERLKMEVEDPTIKDRSARIIDLVSPIGKGQRSL
IVAPPRTGKTVLLQNIAASIEKNHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEP
ATRHVAVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAFNTVVPSSGKVLTGGVDANALQ
RPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKIADKRVY
PAMDILKSGTRKEDLLVDKVDLQKTFVLRRILNPMGTTDAIEFLISKLKQTKTNSEFFDS
MNT
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atgacagagaaccgtctgaacctttccgatctcaaggccaagagcccgaaggatctgctg
gccatggcagaggagctcgagatcgagaacgcctcgaccatgcgcaagggcgagatgatg
ttccagatcctgcgcgaactggccgacgacgattggcaggtcggcggcgatggcgtgctg
gaagtgcttcaggacggcttcggcttcctgcgctcgccggaagccaactacctgccgggc
cccgatgacatctacgtctcgcccgacatgatccgccagttctcgctgcgcaccggcgac
acggtcgaaggcctgatgaaggcgcccgacgacaacgagcgttacttcgccctgaccacc
gtcagctcgatcaacttccaggaacccgagaaggcgaagcacaagatcgccttcgacaac
ctgaccccgctctatcccgacgagcgcctgaagatggaggtcgaggaccccaccatcaag
gaccgctcggcccggatcatcgacctggtctctccgatcggcaagggccagcgttcgctg
atcgtcgcgccgccgcggacgggtaagacggtgctgctgcagaacatcgccgcctcgatc
gagaagaaccaccccgagtgctacctgatcgtcctgctgatcgacgaacgcccggaagaa
gtgaccgacatgcagcgttcggtgaagggcgaggtgatctcctcgaccttcgacgaacct
gcgacgcgccacgtggccgtgtcggaaatggtcatcgaaaaggccaagcgcctggtcgag
cacaaacgagatgtggtgatccttctcgattcgatcacaagacttggtcgtgccttcaac
accgtggtgccctcttcgggcaaggtgctgaccggcggtgtcgacgccaacgccctgcag
cgtccgaagcgcttcttcggcgcggcgcggaacatcgaagagggtggctcgctcaccatc
atcgccaccgcgctgatcgacaccggctcgcgcatggacgaagtgatcttcgaagaattc
aagggcacgggtaacagcgaaatcgtcctggatcgcaagatcgcggacaagcgcgtctac
ccggcgatggacatcctcaagtccggcacccggaaagaggatctgctggtcgacaaggtg
gacctgcagaagaccttcgtgctgcgccgcatcctgaacccgatgggcaccacagatgcc
atcgagttcctgatctcgaagctgaagcagaccaagaccaattccgaattcttcgattcg
atgaacacctga
DBGET
integrated database retrieval system
