Pseudomonas anuradhapurensis: HU763_001875
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Entry
HU763_001875 CDS
T07691
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
panh
Pseudomonas anuradhapurensis
Pathway
panh02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
panh00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HU763_001875 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
panh03021
]
HU763_001875 (rpoD)
Transcription machinery [BR:
panh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HU763_001875 (rpoD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
QXI48247
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All DBs
Position
complement(423859..425709)
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AA seq
616 aa
AA seq
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MSGKAQQQSRIKELITRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDYILGEYDRVTSEGGRLSDVLSGYIDPDDNIAAPTEE
VPIPGAKAATAKEESDDDEEESESGDDEEEAESGPDPEVARQRFGAVADQLQATNKVLKK
NGRAHKESIEALQALADLFMPIKLVPKQFEVLVERVRDALNRLRQQERAIMQLCVRDARM
PRADFLRMFPGNETDQTWSGDLAKRNTKWAAALGEKDAAIVACQQKLIDLENESGLTVAE
IKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcacccgcggtcgtgag
cagggctacctgacttacgcggaggtcaacgaccacctgcctgaggatatttcagatccg
gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagagt
gctccggatgcggatgcccttctgttggcggaagccgacaccgacgaagctgcggccgaa
gaagccgctgctgcgttggcggcagttgaaaccgatatcggccgcacgaccgacccggtg
cgcatgtacatgcgcgaaatgggtaccgtcgagctgctgacccgcgaaggcgagatcgaa
atcgccaagcgtatcgaggaaggcatccgtgaagtcatgggcgccatcgcccacttcccg
ggcactgtcgactacattctcggcgaatatgaccgtgtcaccagcgaaggtggccggctg
tccgacgttctcagcggttacatcgaccctgacgacaacatcgctgcaccgaccgaggaa
gtgccgatcccgggcgccaaggccgcgaccgcgaaggaagagtccgacgacgacgaggaa
gaatccgaaagcggtgacgacgaggaagaggccgagagcggcccggacccggaagtcgcc
cgccagcgtttcggtgccgtcgccgatcagctgcaggccaccaacaaggtcctgaagaaa
aacggtcgcgcccacaaggaaagcatcgaggccctgcaggccctggccgacctgttcatg
ccgatcaagctggtacccaagcagttcgaggtactggtagagcgtgtgcgtgacgccctg
aaccgtctgcgccagcaagaacgcgccatcatgcagctgtgcgtacgtgatgcgcgcatg
ccgcgcgccgacttcctgcgcatgttcccgggcaacgaaaccgaccagacctggagcggt
gacctggccaagcgcaacaccaagtgggctgccgccctgggtgaaaaggacgctgccatt
gtcgcttgccagcagaagctgatcgaccttgagaacgaaagcggcctgaccgttgccgag
atcaaggaaatcaaccgtcgcatgtcgatcggtgaagccaaggcccgccgcgccaagaaa
gaaatggtcgaggcgaacctgcgtctggtgatttccatcgccaagaagtacaccaaccgt
ggcctgcagttcctcgacctgatccaggaaggcaacatcggcttgatgaaagcggtggac
aagttcgaataccgtcgcggctacaagttctcgacctatgccacctggtggatccgtcag
gcgattacccgttcgatcgccgaccaggcacgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagctcaaccgtatttcccgccagatgctgcaggaaatgggtcgcgaa
ccgaccccggaagaacttggcgagcgcatggaaatgcctgaggacaagatccgcaaggta
ctgaagatcgccaaagagccgatctccatggaaaccccgatcggtgacgacgaagattcg
cacctgggcgacttcatcgaggactcgaccatgcagtccccgatcgatgtggccacggtc
gaaagcctcaaggaagccacccgcgacgtgctctccggcctcaccgcgcgtgaagccaag
gtactgcgcatgcgcttcggtatcgacatgaacaccgaccatacgctcgaagaggtaggc
aagcagttcgacgtgacccgtgagcggatccgtcagatcgaagcgaaggcgttgcgcaaa
ctgcgccacccgactcgcagcgagcacctgcgctccttcctcgacgagtga
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