Pseudomonas anuradhapurensis: HU763_002220
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Entry
HU763_002220 CDS
T07691
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
panh
Pseudomonas anuradhapurensis
Pathway
panh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
panh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HU763_002220 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
panh03021
]
HU763_002220 (rpoC)
03400 DNA repair and recombination proteins [BR:
panh03400
]
HU763_002220 (rpoC)
Enzymes [BR:
panh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HU763_002220 (rpoC)
Transcription machinery [BR:
panh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HU763_002220 (rpoC)
DNA repair and recombination proteins [BR:
panh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HU763_002220 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
QXI48306
LinkDB
All DBs
Position
494650..498849
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVKERDGSVVKNTRIVDTTVGRALLFQVVPAGLPYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGTATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGKEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDQGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVVVRSPINCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGEKVEAGAIVAKW
DPHTHPIVTELKGTVTFVGMEEGITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAIKM
VDASGKDLYLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPTDGSEPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEITESGDSSFIKGDQMELTQVLVENERLAAEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgcatcggtctggcgtcgcctgaaatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccagtcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggcgtgatctgcgagaagtgcggcgttgaagttgccctggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcctcgccggttgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgcgatatcgagcgcgtgctctac
ttcgagagctacgtggttatcgacccgggcatgaccaccctggaaaagggccagctgctg
aacgacgagcagtatttcgaagcgctggaagagttcggtgacgacttcgacgcccgcatg
ggtgccgaggctgtccgcgagctgctgcacgctatcgacctggagcacgagatcggtcgc
ctgcgtgaagagattccgcagaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagcgttccagggctcgggcaacctgcctgagtggatggttctgacc
gtcctgccagtgctgccgccggacctgcgtccgctggtgccgctggatggtggccgcttc
gcgacttccgacctgaacgacctgtatcgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctcgatctgtcggcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgacgccctgctggacaacggccgtcgcggtcgcgccatcactggctcgaac
aagcgtcctctgaagtccctggccgacatgatcaaaggtaagcaaggtcgcttccgtcag
aacctgctcggtaagcgtgtggactactctggccgttcggtaattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggccctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggctgccaagaagatg
gtcgagcgcgagctgccagaggtttgggacgtgctcgccgaggtgatccgcgaacacccc
gtactgctcaaccgtgcaccaaccctgcaccgcctgggtatccaggcctttgagccggtt
ctgatcgaaggcaaggctatccagctgcacccgctggtctgtgccgcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgaccctggaagcccagctcgaagcg
cgcgcgctgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtactgggtctgtactacatgacccgcgaagccatcaacgcc
aagggcgaaggtcgcgtgttcgccgacctgcaggaagtcgaccgcgtattccgcgccggc
gaggctgccctgcacgcgaaaatcaaggttcgtatcaacgaaaccgtgaaagagcgtgac
ggttccgtggtcaagaacacccgcatcgtcgacaccactgtcggccgtgcgctgctgttc
caggttgtaccggcaggcctgccgtacgacgtggtcaaccagccgatgaagaagaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgttatcttc
gctgaccagctgatgtacaccggtttcgcttactcgaccatttccggcgtttccatcggt
gttaacgacttcgttatcccggacgagaaagcccgcatcatcggtaccgctaccgacgaa
gtgaaggaaatcgagagccagtacgcttccggcctggtaacccagggcgagaagtacaac
aaggtcatcgacttgtggtcgaaggcgaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgaccgcgaaggcaaggaagtcgagcaagagtccttcaac
tcgatgtacatgatggctgactccggtgcgcggggttccgcggcccagatccgtcagctg
gccggtatgcgtggcctgatggccaagccggacggctcgatcatcgagacgccgatcacg
gcgaacttccgtgaaggcctgagcgttctgcagtacttcatttcgacccacggtgctcgt
aagggtctggcggataccgcactgaagactgcgaactccggttacctgactcgtcgtctg
gtagacgttgcccaggatctggtggttaccgagatcgactgcggcaccgaccagggcctg
ctgatgaccccgcacatcgaaggcggcgacgttgtagagccgctgggtgagcgtgtactg
ggtcgtgtcatcgcccgtgacgtgttcaagccaggcaccgaggacgtcatcgttccggcc
ggtaccctggtcgacgagaagtgggtcgagttcatcgagctgaacagcatcgacgaagtg
gtcgtgcgttcgccgatcaactgtgaaacccgctacggcatctgcgccaagtgctacggt
cgtgacctggctcgcggtcaccaggtgaacatcggtgaagctgtcggcgttatcgctgcc
cagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgct
gcaagccgtacctcggctgccgacagcgtccaggtgaagaacggcggtatggtccgtctg
cacaacctcaagcaggtagagcgtgccgatggcaacctggttgccgtatcgcgttcgggc
gaactggccattgccgacgaattcggtcgtgagcgtgagcgctacaagctgccttacggt
gcggtgatctcggtcaaggaaggtgaaaaggtcgaagctggcgccatcgtcgccaagtgg
gacccgcacacccacccgatcgttaccgagctgaaaggtaccgtgaccttcgtgggcatg
gaagaaggcatcaccatcaagcgtcagaccgacgaactgaccggtttgaccaacattgaa
gtcctggacgtcaaggatcgccctgccgctggtaaggaaatccgtccggcaatcaagatg
gtcgacgcttctggcaaggacctgtacctgccaggtaccgacgtacctgcccagtacttc
ctgccggccaacgcccttgtcggtgtggctgacggtgcgcagatcggtgttggtgacgtt
atcgcgcgtatcccgcaagaaacgtcgaagacccgtgacatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcgcgccgtccgaaagaagcctcgattctggctgaagtcagc
ggcaccatcgccttcggtaaagagaccaagggcaagcgtcgcctggtcattaccccgacc
gatggcagcgagccgtacgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggcccgagcgatccgcacgacatc
ctgcgtctgctgggtgtgagcgcgctggcgaagtacatcgtcaacgagatccaggacgtt
taccgtctgcagggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgcaaggtcgagatcaccgagtcgggcgattccagcttcatcaagggcgaccagatg
gaactgacccaggtgctggtagagaacgagcgtctcgccgccgaggacaagttcgtctcc
aagttcacccgcgtgctgctgggtatcaccaaggcctcgctgtcgaccgagtcgttcatc
tccgcggcttccttccaggaaaccacccgcgtactgaccgaagcggcggtaaccggcaag
cgcgactacctgcgcggcctgaaagagaacgtggtcgtgggtcgtctgatcccggccggt
actggtctggcctaccacagcgagcgcaagcgccgccgtgacgccgacaagccgctgcgt
gtgagcgccagtgaggtggaagccgcactgaccgaagcgctgaactccagcggtaactaa
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integrated database retrieval system
