Pseudomonas anuradhapurensis: HU763_017680
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Entry
HU763_017680 CDS
T07691
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
panh
Pseudomonas anuradhapurensis
Brite
KEGG Orthology (KO) [BR:
panh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
panh03019
]
HU763_017680 (hrpA)
Enzymes [BR:
panh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HU763_017680 (hrpA)
Messenger RNA biogenesis [BR:
panh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HU763_017680 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
HA2_N
nSTAND3
AAA_25
T2SSE
NACHT
ResIII
ABC_tran
AAA_30
SRP54
DUF3939
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QXI46591
LinkDB
All DBs
Position
complement(3839105..3843010)
Genome browser
AA seq
1301 aa
AA seq
DB search
MTDHAIDKLLQNLDHAMIADRHRLRRQLHDLRKRPDEAKLAQWVDKVQASCAQVTARQQS
VPTVRYDDNLPIAAKRDEIKKALAEHQVLVIAGETGSGKTTQLPKICLELGRGSHGMIAH
TQPRRIAARSVAARVAEELGTPLGGLVGYQVRFEDQSDANTLVKLMTDGILLAETQHDRF
LERYDTIIVDEAHERSLNIDFLLGYLKTLLHRRPDLKLIITSATIDLERFSQHFDGAPII
EVSGRTFPVETWYRPLTSEQDEEGNQIEDDLTVDQAILATLDELAQHERSVGKGPGDVLI
FLPGEREIRDAAEILRKAQLRHTEILPLYARLSPAEQQRIFQPHSGRRVVLATNVAETSL
TVPGIRYVIDTGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICVRLYSEE
DFNSRPAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELSAV
NRENQLTPIGRQLARLPIDPRLGRMLLEGARLGSLQEVLIVTSALSVQDPRERPPERQQA
ADQAHAQWKDVDSDFAALVNLWRGFEEQRQALTANPLRNWCRKNFLNYLRLREWRDAHRQ
LALICRDLQLTVNKEPSDYPKMHKAILSGLLSQIGQKTEEGDYQGARQRRFWVHPSSGLG
RKRPQWVMAAELVETTKLYARMVAKIEPDWIEPLAGHLVKKNHFEPHWEKKRGQVVAYEQ
ITLYGLILVGRRPVHFGPIDPVTSRELFIREGLVGGEIQSRAKCLAANKRLLEQLDELEA
KARRRDILADEETLYAFYEARLPAEIHQTATFDSWYRMGSQKDANLLIMREEDVLAREAS
EVTAAQYPDSLQVGDLRLPLSYHFEPGHPRDGVTVRVPAPLLPSLPGERLEWLVPGLLEA
KCVALVRNLPKALRKNFVPVPDFVKASLARMAFGHGALPQALGQELLRMTGARVPDEAWD
ESVNLVEGHLRMNIEVVDGQGKFLGEGRDLAELTARFAAASQAALAVPRDASSEQPVQAK
AFSEVKQTAQQNIAGLSMTVYPALVEDNGSVREGRFSTQAEAEFQHRRALQRLLLQQLAE
PAKYLRGKLPGLTELGLLYRDMGRVEALVEDILLASLDSCILDGEQALPRDGAALAGLAE
RKRGSWAEHAERLARQTLEVLKLWHGLQKRFKGKIDLSQAVALNDIKQQLGNLVYPGFVR
ETPGAWFKELPRYLKAVELRLEKLGAQVQKDRVWSAELGNLWAQYKARADKHAQEGKRDE
QLTVYRWWLEEYRVSLFAQQLGTKVPISDKRLSKQWSQVEG
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccacgccatcgacaaactgctgcaaaacctcgaccacgccatgatcgccgac
cgccatcgcctgcgccggcaattgcacgacctgcgcaagcgccccgatgaggcgaagctg
gcgcagtgggtggacaaggtccaggcctcctgcgcccaggtcaccgcgcgccagcagagc
gtgcccaccgtgcgctacgacgacaacctgccgatcgccgccaagcgtgacgaaatcaag
aaggccctggccgaacaccaggtgctggtgatcgccggcgaaaccggttcgggcaagacc
acccagttgccgaagatctgcctggaactcggccgaggcagccatggcatgatcgcccac
acccagccacgccgcatcgccgcgcgcagtgtggctgcgcgggtcgccgaagagctgggc
acgccgctgggcgggctggtcggctaccaggtgcgcttcgaggaccagagcgacgccaac
accctggtcaagctgatgaccgacggtatcctgctggccgaaacccagcacgaccgcttt
ctcgaacgctacgacacgatcatcgtcgacgaagcccacgaacgcagcctgaacatcgat
ttcctgctcggctacctgaagaccctgctgcaccgccgccccgacctgaagctgatcatc
acctcggcgaccatcgacctggagcgtttctcccaacacttcgacggtgcgccgatcatc
gaagtctccgggcgcaccttcccggtggaaacctggtaccgcccgctgaccagcgagcag
gacgaagaaggcaaccagatcgaggacgacctcaccgtcgaccaggccatcctcgccacc
ctggacgagctggcgcagcacgagcgcagcgtcggcaaggggccgggcgatgtgctgatc
ttcctgccgggcgagcgggaaattcgcgatgccgccgagatcctgcgcaaggcgcaactg
cgccacaccgagatcctgccgctgtacgcgcggctgtcgccggccgaacagcagcgcatc
ttccagccgcacagcgggcgccgcgtggtgctggccaccaacgtcgcggaaacctcgctg
accgtgccgggcatccgttacgtgatcgacaccggcaccgcccgtatcagccgctacagc
taccgcgccaaggtccagcgtctgccgatcgaggccgtgtcgcaggccagtgccaaccag
cgtaaaggccgctgcggccgggtcgagccgggcatctgcgtgcgcctgtacagcgaagag
gatttcaacagccggccggcgttcaccgacccggagatcctgcgcaccaacctggcggcg
gtgatcctgcagatgctccacctgcgcctcggcgcgatcgatgccttcccgttcatcgag
ccgccggatggcaaggccatcagcgatggtttcaacctgctgcaggagctgtcggcggtc
aaccgcgaaaaccagctgaccccgatcggccgccagttggcgcgcctgccgatcgacccg
cggctaggccgcatgctgctcgaaggcgcacgcctgggcagcctgcaggaagtgctgatc
gtcaccagtgcgctgtcggtgcaggacccgcgcgaacgcccgccggagcgccagcaggcc
gccgaccaggcgcacgcgcaatggaaggacgtcgactccgatttcgcggcgctggtcaac
ctctggcgcggtttcgaagagcagcgccaggcgctgaccgccaacccgctgcgcaactgg
tgccgcaagaacttcctcaattacctgcgcctgcgcgagtggcgcgatgcccatcgccag
ttggcgctgatctgccgcgacctgcagttgacggtgaacaaggagccgtccgactacccg
aagatgcacaaggccattctcagcgggctgctcagccagatcggccagaagaccgaagag
ggcgactaccagggggcgcgtcagcggcgcttctgggtgcacccgtcctcgggcctgggc
cgcaagcgcccgcagtgggtgatggctgccgaactggtcgagaccaccaagctgtacgcg
cgcatggtggccaagatcgaaccggactggatcgagccgctggccggccacctggtcaag
aagaaccacttcgaaccgcactgggagaagaagcgcgggcaggtggtggcctacgagcag
atcaccctgtacggcctgatcctggtcggccgccggccggtgcatttcggcccgatcgac
ccggtcacctcgcgcgagctgttcatccgcgaaggcctggtcggcggcgaaatccagtcg
cgcgccaagtgcctggcggccaacaagcgcctgctcgaacagctcgacgaactggaggcc
aaggcgcgccgccgcgacatcctcgccgacgaagaaaccctgtacgccttctacgaagcg
cgcctgccagcggaaatccaccagaccgcgaccttcgacagctggtaccgcatgggcagc
cagaaggacgccaacctgctgatcatgcgcgaggaagacgtgctggcccgcgaggccagt
gaagtgaccgccgcgcaatatcccgacagcctgcaggtgggcgatctgcgcctgccgctg
agctaccacttcgagcccggccatccccgcgatggcgtgaccgtgcgggtgccggcaccg
ctgctgccgagcctgccgggcgagcgcctggagtggctggtgccgggcctgctggaagcc
aagtgcgtggcgctggtgcgcaacctgcccaaggccctgcgcaagaacttcgtgccggtg
ccggacttcgtcaaggcctcgctggcgcgcatggccttcggccacggggcgctgccgcag
gccctgggccaggagctgctgcgcatgaccggtgcgcgggtgcccgacgaggcctgggac
gagtcggtcaacctggtcgaaggccatttgcgcatgaacatcgaggtggtcgatgggcag
ggcaagttccttggcgaaggccgcgacctggccgagctgaccgcacgctttgccgccgcc
agccaggctgcgctggccgtgccgcgcgacgccagcagcgaacagccggtgcaggccaag
gccttcagcgaagtgaagcagaccgcccagcagaacatcgctggcctgtcgatgaccgta
tacccggcgttggtggaagataacggcagcgtgcgcgaagggcgtttctcgacccaggcc
gaagccgagttccagcaccgccgcgccttgcaacgcctgttgctgcagcagttggccgag
ccggccaagtatttgcgtggcaagctgccggggctgaccgaactgggcctgctgtaccgc
gatatgggccgcgtcgaggcattggtcgaggatattctgctggccagcctggacagctgc
atcctcgacggcgaacaagcgctgccgcgcgacggtgccgcattggccgggctggcggag
cgcaagcgcggcagctgggccgagcatgccgagcgcctggcccggcaaaccctggaagtg
ctgaagctgtggcacggcttgcagaagcgtttcaagggcaagatcgacctgagccaggcg
gtggcgctgaacgacatcaagcagcagctgggcaacctggtgtacccgggcttcgtgcgc
gaaacccccggtgcctggttcaaggaactgccacgctacctcaaggcggtggagctgcgc
ctggagaagctcggcgcgcaggtgcagaaggaccgggtgtggagcgccgagctgggcaac
ctgtgggcgcagtacaaggcccgtgccgacaagcatgcccaggagggcaagcgcgacgag
caactgaccgtctaccgctggtggctggaagaatatcgggtctcgctgtttgcccagcag
ttgggcaccaaggtgccgatttctgacaaacgtttgagcaagcaatggagccaggtggag
ggttaa
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integrated database retrieval system
