Pseudomonas anuradhapurensis: HU763_021335
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Entry
HU763_021335 CDS
T07691
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
panh
Pseudomonas anuradhapurensis
Brite
KEGG Orthology (KO) [BR:
panh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
panh03019
]
HU763_021335 (hrpB)
Enzymes [BR:
panh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HU763_021335 (hrpB)
Messenger RNA biogenesis [BR:
panh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HU763_021335 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
CON_HrpB
DEAD
ResIII
AAA_30
Cas3-like_C_2
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QXI47271
LinkDB
All DBs
Position
complement(4654791..4657319)
Genome browser
AA seq
842 aa
AA seq
DB search
MISLPIDVVLPALREALQNRDEAVLEAPPGAGKTTRVPLALLSEPWLAGQSILMLEPRRL
AARAAAERLASELGEKVGETVGYRIRLDSKVGPNTRIEVVTEGILTRRLQADPALEGVGL
LIFDEFHERSLDADLALALSLNGRELLRDDPPLKILLMSATLEGERLSRLLGDAPVVSSQ
GRMHPVDIRWGRPFQPGEFIEPRVVDSVLQALAEQAGSVLVFLPGQAEIRRVHQSLLEAL
GERPEILLCPLHGELDLDAQRAAIDPAPNGRRKVVLATNIAETSLTIDGVRVVIDAGLAR
VPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEAQHEQLAAHGTAEILQ
ADLAGLALQLARWGVTPEQLRWLDQPPAAAFAQAQDLLARLNAYKPGSRDSLSEHGQAMA
ELPAHPRIAHLLLRGQDLGLAQMACDVAALLGERDIQRGGGADLHGRLALVSGESKAARG
SQGGVQRARQLARQYRGLLRGKPRTPVADPDHPRWLGALLALAYPDRVAQQRREGGAEYR
LANGRAALFAEVDALMKCPWLVVADLGSRQGQREERIYLAAEFDPALLDGVLAEQVERVD
LLDWDEREQVLRAERQVKVGELILSRQPLPGLDDEARARALLGLVRRKGLNLLSWTPELR
QWQARVALLRQLDLAKEGHSEWPDLSDEALLASLEDWLQPYLGKVSRLSHFTALDLPSML
RNLLPWPLPQRLEEQAPAHLAVPSGSNIRLDYSENPPILAVRLQELFGLADTPRIANGRL
QVKLHLLSPARRPVQVTQDLASFWRTTYAEVKKDLKGRYPKHYWPDDPLVAEATARAKPR
GT
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgatttcattaccgatcgatgttgtcttgcccgccttgcgcgaagccctgcaaaaccgt
gacgaagcggtgctcgaggcgccgcccggcgccggcaagaccacccgcgtaccgctggcg
ctgctcagcgagccctggctggccgggcagagcattctgatgctcgagccacggcgcctg
gcggcccgggctgcagccgagcgcctggccagcgagctgggcgaaaaggtcggcgaaacg
gtgggctaccgcattcggctggacagcaaggttgggccgaacacgcgcatcgaagtggtg
accgaaggcatcctcacccgccgcctgcaggccgacccggcgctggagggggtgggactg
ctgatcttcgacgagttccacgagcgcagccttgacgccgacctggccctggcgctgagc
ctcaatggccgcgagttgctacgagacgacccgccactgaagatcctgctgatgtctgcg
accctggagggggagcgcctgtcccggctgctgggcgatgccccggtggtcagcagccaa
ggccgcatgcaccccgtggatatccgctgggggcgccccttccagccgggcgagttcatt
gagccacgggtagtggacagtgtattgcaggcgttggccgagcaagccggtagtgtgctg
gtgttcctgccaggccaggccgagatacgccgggtgcaccagagcctgctggaagcgctg
ggtgaacggcccgaaatcctgctgtgcccgctgcatggcgaactcgacctcgatgcccag
cgcgcggccatcgacccggcgcccaacggccggcgcaaggtggtgctggccaccaatatc
gccgagaccagcctgaccatcgacggtgtgcgggtggtgatcgatgccggcttggcacgg
gtaccgcgcttcgatcccggcagcggcatgacccgcctggacacccagcgcatctcgcgc
gccagcgccacccagcgcgccgggcgtgctggccgcctggagcccggcgtgtgctaccga
ttgtggtccgaggctcagcatgagcaactggccgcccatggcactgccgaaatcctgcag
gccgacctggccggcctggccttgcaactggcacgctggggcgtgacgcccgagcagttg
cgttggctcgaccagccaccggctgccgcgttcgcccaggcccaggacctgctggcacgg
ctcaacgcctacaaacccggcagccgcgacagcctcagcgaacatggccaggccatggcc
gagctgccggcacacccccgtatcgcgcatttgctgctgcgcggtcaggacctggggttg
gcacagatggcctgcgacgtcgctgcgctactgggcgagcgggatattcagcggggcggc
ggtgccgacctgcatggtcggttggcgctggtcagtggcgagagcaaggccgcccgtggc
agccagggcggcgtgcagcgggcccgccagctggcgcgtcagtaccgtggtttgctgcgc
ggtaagccgcgaacgccggttgccgacccggaccatccgcggtggctgggtgccttgctg
gcgctggcctaccctgaccgcgtcgctcagcaacgtcgcgagggcggcgcggagtaccgg
ctggccaatggtcgtgcggcgctgtttgccgaggtcgatgcgttgatgaagtgcccctgg
ttggtggtcgccgacctgggcagccgccagggccagcgtgaagaacgtatctaccttgcg
gcggaattcgacccggcactgctcgatggcgtactcgccgagcaggtggagcgggttgat
ctgctcgactgggatgagcgcgagcaggtgttgcgtgccgagcgacaagtcaaggttggc
gagctgatcctcagccgccaaccgttgcccggcctggacgacgaggcgcgggcccgggcg
ctgctggggctggtccggcgcaagggtctgaacctcttgagctggaccccagagctgcgc
caatggcaggcacgtgtagcgttgttgcgccagctcgacctggccaaggagggccacagc
gaatggcccgacctcagcgacgaggccctgctcgccagcctggaagactggttgcagccg
tacctgggcaaagtctcgcgcctcagccatttcaccgcgctggacctgccgtcgatgctg
cgcaacctgttgccctggccgttgccgcagcgcctggaagaacaggcccccgcgcacctg
gcagtgccgtccgggtcgaatatccgcctggattacagcgaaaacccgccgatcctcgcg
gtgcgcctgcaggagctgttcggcctggccgacacgccacgcatcgccaatggccgcctg
caggtcaagctgcacctgttgtcaccggcacgcaggccggtgcaggtgacccaggacctg
gccagcttctggcgtacgacctatgccgaagtgaagaaagacctgaaaggacgctacccg
aagcattactggccggatgacccgttggtggccgaagctaccgcacgggcgaagccgcgc
ggcacctga
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