Polynucleobacter antarcticus: DCO16_00230
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Entry
DCO16_00230 CDS
T08332
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pani
Polynucleobacter antarcticus
Pathway
pani03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pani00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DCO16_00230 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pani03021
]
DCO16_00230 (rpoB)
03400 DNA repair and recombination proteins [BR:
pani03400
]
DCO16_00230 (rpoB)
Enzymes [BR:
pani01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DCO16_00230 (rpoB)
Transcription machinery [BR:
pani03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DCO16_00230 (rpoB)
DNA repair and recombination proteins [BR:
pani03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DCO16_00230 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QKM63546
UniProt:
A0A6M9Q0H5
LinkDB
All DBs
Position
38365..42465
Genome browser
AA seq
1366 aa
AA seq
DB search
MNYSFTERKRVRKSFAKRVNNHQVPYLIATQLESYAKFLQAEKPAMSRLTEGLQAAFTSA
FPIVSNNGYARMEYVSYQLAQPPFDVKECQQRGYTYHSALRAKVRLIIYDREAPTKVKEV
KESEVYMGEIPLMTDNGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARII
PYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLNNEQILANFFNFDHFALTANGA
AMEFVPERLRGQLANFDVLDKNGVVVIQKDKRINAKHIRELEAAKTKNIVVPDDYLVGRV
VARNTIDPDSGEILAYANDEITEELLATLRDAGIKQLETIYTNDLDSGAYISQTLRTDET
ADQMAARIAIYRMMRPGEPPTEDAVEALFQRLFYNEDSYDLSRVGRMKVNSRLGRSEMEG
PMVLSNEDILETIKSLVDLRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRVERAVK
ERLGQAETENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRISALGPG
GLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARLNEHGFLETPYRKVAN
SKVSDEVMYLSAIEEAKYVIAQANATIDKNGKLADELVSARQAGETMMVSPERIDFIDVA
PSQIVSAAASLVPFLEHDDANRALMGANMQRQAVPCLRPDKPLVGTGLERIVAVDSGTVV
LANRGGIVDYVDANRIVIRVNDDETAAGEVGVDIYNLIKYTRSNQNTNINQRPIVQMGDR
VARGDVVGDGASTDLGELALGQNMTVAFMPWNGYNFEDSILISEKVVADDRYTSIHIEEL
SVVARDTKLGSEEITRDISNLAESQLSRLDESGIVYIGAEVEAGDVLVGKVTPKGETTLT
PEEKLLRAIFGEKASDVKDTSLRVPSGMIGTVIDVQVFTREGIERDARAQAIIQEELQRY
RLDLNDQLRIVEGDAFMRLEKMLVGKVVNGGPKKLAKGSKIDKAYLDDLDKYHWFDIRPS
DDEVAAQIEAIKSSIEAKRKQFDEAFEEKRTKLTQGDDLQPGVTKMVKVYLAVKRRLQPG
DKMAGRHGNKGVVSKIAPAEDMPFMADGRPVDIVLNPLGVPSRMNVGQILETHLGWAAQG
IGKRIDEMVREHAKQAELRKFLKQLYNETGRIEDIDNFTDEQVTVLAENLRQGLPFATPV
FDGATEAEISRMLELAYPQEVATSLKMTPSRQQMILCDGRTGDQFERPVTVGVMHVLKLH
HLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSD
DVAGRTKVYENIVKGEHTIDAGMPESFNVLVKEIRSLGIDIDMERN
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atgaactacagcttcaccgaacgcaagcgagtccgtaaaagctttgctaaaagagtaaat
aatcaccaggtcccgtacctgatcgcaacacagctggaatcctacgctaaatttttacag
gctgaaaagccagccatgtctcgccttacagagggacttcaagctgcctttacttcagca
ttcccaattgtgtccaacaatggttacgcacgcatggaatatgtgtcgtatcaattggca
cagccaccatttgacgttaaagaatgtcaacaacgtggttacacctatcactcagccttg
cgcgctaaagttcgcttgatcatttatgatcgcgaagcgcctaccaaggttaaagaagta
aaagagagtgaagtctacatgggtgaaataccactcatgactgataacggttctttcgtg
attaacggtacagagcgcgtcatcgtatctcagttacaccgttctccaggcgtgttcttt
gagcacgataaaggcaagacacatagttcaggtaagttactgttctcagcacgcatcatt
ccttaccgtggttcatggctcgattttgagtttgatccaaaagatattttatatttccgc
gttgaccgtcgtcgtaagatgccagtcaccattttgctcaaagcaattggtttgaacaac
gagcagattttggctaacttctttaactttgaccactttgcattgacagccaacggcgct
gcaatggaatttgtgccagagcgtttgcgtggacagttagctaactttgatgtgctcgat
aagaatggcgttgtagtcattcaaaaagacaagcgtatcaatgcgaaacatatccgtgag
ctcgaagcagctaagactaaaaatatcgttgttcctgacgactacttggttggccgtgta
gttgctcgcaatactattgatccggattcaggtgaaatcttggcttacgctaatgatgaa
atcactgaagagttgctggcgacattgcgcgatgcaggcatcaagcaattagaaactatt
tacaccaatgatttagactctggtgcatacatttcacagacattacgtactgatgaaact
gcagatcaaatggctgcacgtatcgctatttatcgcatgatgcgtcctggcgagccacca
acagaagatgcggtagaggctttattccagcgcttgttctacaacgaagatagttacgat
ttatcccgtgtgggtcgtatgaaggttaacagccgtcttggtcgttcagagatggaaggc
cctatggtcttgtcgaatgaagatattctcgagactattaagtccctcgttgacttgcgt
aacggcaaaggcgaagtggatgatatcgatcacttaggtaatcgtcgtgtacgttgcgtc
ggtgagttagcagaaaatcaattccgtgcaggtttatcacgcgtagagcgtgcggtgaaa
gaacgtcttggccaagctgagacagaaaacctcatgccgcatgatttgattaacagtaag
ccaatctcttcagcgattcgtgagttctttggatcttcacagttgtcccagtttatggac
caaaccaacccattgtctgaaatcacgcacaagcgtcgaatttctgcattgggacctggt
ggtttgacacgtgagcgcgcaggcttcgaagtgcgtgacgtgcatccaacccactatggc
cgtgtatgcccaattgaaacgccagaaggaccaaacattggtctgatcaactcactcgct
ttgtttgcgcgtttgaatgaacatggtttcttggaaacgccatatcgtaaggttgctaat
agcaaggtcagcgatgaagtaatgtatctctccgcaattgaagaggctaaatacgttatt
gctcaggctaatgctacgatcgacaaaaatggtaagttggctgatgagttagtttctgct
cgtcaagcaggcgagaccatgatggtgagcccagagcgtattgatttcatcgacgttgcg
cctagtcagatcgtttctgctgctgcttctttggttccattcttggagcatgatgatgcg
aatcgcgccttgatgggtgcaaatatgcagcgtcaagcggttccttgcttgcgtccagat
aagccattagtgggaacaggtttagagcgtattgtggcagtggactccggaaccgtagtg
ttggcaaatcgcggtggtattgtcgattatgttgatgcaaaccgtattgtgattcgtgta
aacgatgatgagacagctgcaggtgaagtaggtgtggatatttataacctcatcaagtac
acccgttcaaatcaaaacaccaacatcaatcagcgtcctattgtgcaaatgggcgaccgt
gttgctcgtggcgacgttgttggtgatggcgcatcgaccgatttaggtgaattggcttta
ggtcaaaacatgactgtggcattcatgccatggaatggctataacttcgaagattcaatt
ttgatttctgagaaggtcgttgctgacgatcgttacacctcgattcatattgaggaattg
tcggtggttgcgcgtgatacgaagttaggctcagaagaaattacacgcgatatctctaac
ttggctgagtcacaactctcccgtttagatgagagcggcattgtgtacattggtgctgaa
gttgaagccggcgacgtcttggttggcaaggtaactccaaagggcgagactactctcaca
cctgaagagaagttgctgcgtgcgatcttcggtgaaaaagcatctgacgttaaagatact
tctttgcgcgttccatctggaatgattggtacggttattgacgttcaagtcttcactcgt
gaaggtattgagcgtgatgcccgtgcacaagcgattattcaagaagagctgcaacgttat
cgcctggacttaaatgaccagctacgtatcgttgagggcgatgccttcatgcgtttagaa
aaaatgctcgttggcaaagtcgttaacggtgggcctaagaagttagctaaaggtagcaaa
attgacaaggcttatcttgatgatttggataagtaccattggtttgatattcgtccttca
gatgatgaagttgccgctcaaattgaagcaattaaatcttctatcgaagcgaagcgtaag
caatttgatgaggcttttgaagagaagcgcaccaagttgacgcaaggcgatgatttgcag
cctggcgtaacgaagatggttaaggtgtacttagctgtgaagcgtcgtttgcagcctggt
gacaagatggccggtcgtcacggtaacaaaggcgtggtttctaaaattgctcctgcagaa
gacatgccatttatggctgacggacgccctgttgatattgtcttgaacccgctgggcgtt
ccttctcgtatgaacgtaggccagatcttggaaacccacttaggttgggcggctcaaggt
attggtaagcgtatcgatgagatggttcgcgagcatgctaaacaagctgaactccgcaag
tttttaaagcagctttacaacgaaacaggccgtattgaagacatcgacaactttacggat
gagcaagtgactgtgttggctgagaatttacgccaaggcttgccatttgctacgccagta
tttgatggtgctactgaggcagaaatcagcagaatgctcgagttggcttatccacaagaa
gtcgctacttctttgaagatgaccccatcccgtcagcaaatgattctgtgcgatggacgg
accggcgatcagtttgagcgtcctgttacggttggtgtcatgcatgtcttgaaactccat
cacttagtggatgacaagatgcacgcacgttcaactggaccttactctttagtaacgcaa
cagccgctgggtggtaaagcccagtttggtggtcagcgctttggtgagatggaagtttgg
gccctcgaagcatacggtgcttcatatgtcttgcaggaaatgctgacagtgaagtccgat
gacgtcgcaggccgtaccaaggtttacgaaaacatcgtcaagggcgagcacacaattgat
gctggcatgcccgaatccttcaacgtactggtaaaagaaatccgttcgttgggtattgac
attgacatggagcgcaactga
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integrated database retrieval system
