Polynucleobacter antarcticus: DCO16_06670
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Entry
DCO16_06670 CDS
T08332
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pani
Polynucleobacter antarcticus
Brite
KEGG Orthology (KO) [BR:
pani00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pani03019
]
DCO16_06670 (hrpA)
Enzymes [BR:
pani01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
DCO16_06670 (hrpA)
Messenger RNA biogenesis [BR:
pani03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
DCO16_06670 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
DEAD
Helicase_C
HA2_C
AAA_19
AAA_30
AAA_22
NACHT
HA2_N
nSTAND3
T2SSE
AAA_25
DUF3336
SRP54
AAA_11
SLFN-g3_helicase
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QKM62766
UniProt:
A0A6M9PY18
LinkDB
All DBs
Position
complement(1271419..1275510)
Genome browser
AA seq
1363 aa
AA seq
DB search
MQEPINQQKPKASPIAVPGSNTLRRLEIRFPEELPVSGQRQIIKDALNSHQVIIVCGETG
SGKTTQLPKICLDLGRGTMNGGHLIGHTQPRRIAATATAKRIAQELGTPIGQDVGYQIRF
ADKTSQGASIKLMTDGILLAETQRDPQLRAYDTLIIDEAHERSLNIDFLLGYLRQLLPKR
PDLKLIITSATIDAQRFSDHFTIGGKLAPVIEVSGRLFPVEQRYISLEPEARADAKSDGK
KPSKEAKEIPDAVTEAIANVWREGASGAGDVLVFLPGEREIRDCAEALRKDHVLQQRFHP
EILSLFARQSVAEQERVFSPGNGRRIILTTNVAETSLTVPNIRYVVDSGLARVKRYSYRN
KVEQLQIEPISQAAANQRAGRCGRVSDGICIRLFSEQDYLSRPKFTDPEILRSSLAAVLL
RMSALRLPRIQEFPFIDKPLGRAIADGVQLLDELGAIEYDEVLTAESQDSNRRFKLTLIG
KQLADLPLDPRIGRMLLAAKEHHALREVTIIASALATQDPRERPMDQAAAADQAHLQFAD
ERSEFLSFVKLWDWYHDALRHKSSNRQLENLCRSKFLSPRRLREWRDIHGQLHTMLGEKD
WKENPSSATYEQVHLSLLTGLLGYVAKKEEDEKSQERGSKTGSYIGARGIRPFIWPGSTI
GKKAGAWILAGELQETNRMYARTIAKIEPQWVEKVAAHRLITSLSDPFWDSRQGEVMIFE
RGTLYGLPIYHGRRVRFEPHNPSEARALFISQALVQEGMFGRMDTPALMRETEADARKQY
PGSFEFFWHNRRLIKEIEALEHRSRRPDVLVDDDLLFAFYDSRIPQDVLSRDSLKAWLKR
PAKKEGDDAINHDAQLRLSKADLMRHEAAGITVDRYPKIIRFGAGDLSLTYHFEPGSPKD
GVTLVVPLTLLNQVDGRRCEWLVPGMCEEKILLLLKTLPQKLRRHCVPLPEYAKAFLDRM
LDAGQFGQGDFLDSLITDIRKERGLEIKRADFRPEALPLHSSMNFRLVDEHGRQLELERN
LSRLRAEYGEQARTAFQAIAQQAVHEELGIDTPAVPLGTVVNKAIPTSAATSPIEQGGFR
SWEFGELPETLEIQKGSRTLFGYPALVDRGDTCDLEVFDDLLEARKYHWQGLRRLFALSN
KDTLKALQKQLPGIRELGLLFINIGSVEALIEQILDLALERAFMSDPLPVNAEQFSDRLQ
AGKPGLALIAQEIAKHALAALQAYADLQKKLAQAKAASPSAYADIQSQVQGLIFPKLISG
IPYGQLVHLPRYLKAIALRIDKLRSNPVRDAQCQKDWESVARPWQKLIQNSQGSHGYIVN
NDEPLQEFRWQLEELRVALYAQELKTPTPMSLKRLEKVLSSLR
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
gtgcaagagcccataaaccaacaaaaacccaaagcaagcccgattgctgtgcctggttcc
aacaccttgcggcgcctagagattcgctttccggaggagttgcccgtatctggtcaacgc
caaatcatcaaagatgccttgaactctcaccaggtgatcattgtctgtggggagacaggt
tcaggcaaaacaacccagctgcccaagatctgcttagacctcggtaggggcaccatgaat
ggtgggcacttgatcgggcacacacaaccccgccggattgctgcaacagccactgctaag
cgtatcgcgcaagagctgggaacgccaattggtcaggatgtcggctatcagatccgcttt
gccgacaagaccagtcaaggtgcttctatcaaactcatgacagatggtattttgctggca
gagacccagcgcgatcctcaactacgcgcttatgacaccctcattattgatgaggcccat
gaacgtagtcttaatattgactttctgttgggttatctcaggcagttgctcccaaagcgt
ccagacttaaagctcattattacctcggccaccatagatgcccaacgattttctgatcac
tttacgatcggtggcaagcttgccccagtcattgaggttagcggtaggctctttccggtt
gagcagcgatatatctcattggagcccgaggctcgagccgatgccaagtctgacggtaaa
aaaccatctaaggaagcaaaagaaattcctgatgcagtgactgaggcgattgccaatgtc
tggcgagagggcgcttctggtgccggggatgttttagtgtttttgccaggagagcgtgag
attcgggattgtgctgaagcactcagaaaagaccatgtactccaacaacgatttcatcca
gagatattaagtctatttgctcgtcagtcggtagcggagcaagagcgtgtttttagtcct
ggaaatggccgtcgcatcattctcacgacaaacgttgctgaaacttcattaacggtaccc
aatattcgttatgtggttgatagtggcttggcgcgggtcaagcgttattcataccgtaac
aaagtagagcagttacaaattgagccgatttcacaagcagcagccaatcagcgtgcaggt
cgatgtggccgagtatccgatggtatttgtattcggctttttagtgagcaggattatctc
agtcgtcctaaattcactgatcctgaaattctccgaagttccttagcggcggtactttta
cgtatgagcgcactgcgtttacccagaattcaagaatttccatttatagataaaccactg
ggtcgtgcgattgcagatggggtgcaactcttagatgagttaggagcgattgagtatgac
gaggttttgactgcagaaagtcaagatagtaatcgacgatttaagttgacccttatcggc
aagcaattggcagacctacccttagatcctcgtattggccgtatgcttttggcagccaaa
gaacaccatgccttgcgtgaggtgaccattattgcttcggccttagctactcaagatcct
cgtgagcgaccgatggatcaggctgcagctgcagatcaagcgcacttacagtttgctgat
gaacgctcagaatttttaagctttgtaaaactgtgggactggtatcacgatgctttacgt
cataaaagcagtaatcgtcaattagaaaatctttgtcgcagtaagtttttatctcctcga
cgtttacgtgaatggcgagatattcatgggcagctacatacgatgttgggagaaaaggat
tggaaagaaaacccttcgtccgcaacctatgagcaagtgcatttatctttacttacaggc
ttattgggatatgtcgccaaaaaagaagaggatgaaaaatctcaagagcgcggcagcaag
acgggaagctatatcggcgctcgcggtattcggccgtttatttggccgggatcaaccata
ggcaaaaaagcaggtgcctggattttggcaggtgagcttcaagaaacaaaccgaatgtat
gcccgcacgattgccaagattgagcctcaatgggtggaaaaagtagcggcgcatcgcctg
atcacttccttaagtgacccattttgggatagtcgccaaggtgaggtaatgatttttgag
cgcggcaccctgtatggattacccatctatcatggccgccgtgttcgttttgagcctcat
aatccctctgaggcgcgcgcactcttcattagccaagccctagtgcaagagggcatgttt
ggtcgcatggatacgccagccctgatgcgggagactgaggcagatgcccgcaaacaatac
cctggtagttttgaattcttctggcataaccgtcggctaattaaagaaattgaagcgctc
gaacatcgctctaggcgcccagatgtattggtggatgacgacttgttatttgctttttat
gattcacgtattccgcaagatgtgctcagtagagacagtctaaaggcgtggttaaagcgc
cctgcgaaaaaagagggtgatgacgctattaatcatgatgctcaactccgtttatctaaa
gcggatttaatgcgacatgaagcagcgggtattacagtagatcgttatccaaaaatcata
cgatttggcgccggtgacctaagtttgacttatcactttgaaccaggtagcccaaaggat
ggcgtgacgctagtggttcctctaaccttactaaatcaggtagatggccgtcgttgtgaa
tggcttgtacctggaatgtgtgaggaaaaaatactcctcctcctaaagacgcttcctcaa
aaactacgccgtcattgtgtacctttgccggaatacgcaaaggctttcttagatcgtatg
ctggatgcaggtcaatttggtcaaggtgactttttagatagtctgattactgatatccgc
aaagagcgtggcttagaaatcaagcgagcagattttaggccagaagccttaccactgcat
tcctccatgaattttcgtttagtggatgagcatggtcgacaactggagctagagcgtaat
ttaagtcgcttacgagcagagtatggtgagcaggcgcggactgcatttcaggcaattgct
caacaggctgttcatgaagagctaggtatcgacaccccagcggtgccacttggtactgtt
gttaacaaggctatccccacttcagccgctaccagtccgatagagcagggcggttttcga
agttgggagtttggtgagttgccggagactttagaaattcaaaaaggaagccgcactttg
tttggctaccccgccttggttgaccgcggtgacacatgtgatctcgaggtatttgatgat
ttattagaagcaagaaaataccattggcaaggactacgtcgtctttttgctttgtcgaat
aaagacactttaaaagccttgcaaaaacagcttccaggcatacgtgagctgggtctgctt
tttattaatattggctcagtagaggcgcttatcgaacaaattctggatcttgccctggag
cgtgcttttatgtctgaccccttgccggtcaacgcagaacaattttccgatcgcttgcag
gctggaaaacctggattggctttaattgctcaggagattgccaaacatgccctggcggcg
ctacaagcctatgctgatttacaaaaaaagcttgctcaagcaaaagctgcctcgccaagc
gcgtatgcagatattcagtcacaagtacagggattgatttttcctaaattgatttctggt
attccatatggccagctagtccatttgcctcgctacctcaaggcgattgctttgaggatc
gataagttacggtctaatcctgtccgcgatgcccaatgtcaaaaagattgggagtcagtg
gcaaggccatggcaaaaactgattcaaaatagccaggggagtcatggctacatagtaaat
aatgatgagcccttgcaggaatttcgttggcagcttgaggagttaagggttgctctttat
gcccaagaattgaagacgcctaccccgatgtccctcaaacgacttgaaaaagtcttatct
agcttgagataa
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