Polynucleobacter antarcticus: DCO16_06700
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Entry
DCO16_06700 CDS
T08332
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pani
Polynucleobacter antarcticus
Pathway
pani03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pani00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCO16_06700 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pani03019
]
DCO16_06700 (rnr)
03016 Transfer RNA biogenesis [BR:
pani03016
]
DCO16_06700 (rnr)
Enzymes [BR:
pani01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DCO16_06700 (rnr)
Messenger RNA biogenesis [BR:
pani03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DCO16_06700 (rnr)
Transfer RNA biogenesis [BR:
pani03016
]
Prokaryotic type
tRNA degradation factors
DCO16_06700 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
CSD
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
QKM62771
UniProt:
A0A6M9PR02
LinkDB
All DBs
Position
complement(1280092..1282485)
Genome browser
AA seq
797 aa
AA seq
DB search
MRKAKDLVPREADRLGTVQGHRDGFGFVIPDDGGEDIFLSEREMSRVMHSDRVSVRVLGT
DRRGRPEGQIVEVILHANKVVIGRLLNENGVLIVAPEDKRIGHDILMPPKGQGNAKLGQV
VSVEIIDYPDSYRQAVGRVVEVLGEIDDPGMEIEIAVRKYGVPHVFSVAAQKEADALPDT
VQQSDLEGRVDLRDVPLVTIDGADARDFDDAVYCEPVMYGKAKAWRLIVAIADVSHYVKP
GHPLDDEGLLRATSVYFPRRVIPMLPEKISNGLCSLNPGVDRLCMVCDSVVDTHGEVLAY
QLYPAVMHSAQRFTYDAVWEVLSNSKGPEASRFAELRPLLTNLYSLYKILLDARQKRGAI
EFETTETQIISNELGKILRIEPRLRNDAHRLIEECMLTANVCAADFIDKNKHLSLYRVHG
EPSEEKLATLRQVLRTSSLSLGGGDKPKPKDYSKLMREIKERPDANMLQTVVLRSMQQAM
YQPDNEGHFGLAYPAYSHFTSPIRRYPDLLTHRVIKSILAKKPYVPVLPPTVPLNLTLPR
KGKGRENAVNAKKSHHDAKEASAKGTRLPKLPKGANAALPIWGQLGVHCSSNERRADEAS
RDVEAWLKCYYMRDHLGQEYAGSVTGVASFGLFIQLENLFVEGMVHVTELGGDYFQYDEA
RQELRGERTGIRYRLGDRVHVLVSRVDLDARKIEFSLVKSVGLEPGGTTNRRQIILASDT
GRPNKKAAPKKGRSGSKEPQRHSGVNVNAAKSAGNLGANQAKGKATKSTKPSKPTRSAGK
PAGTKPPVRSTNAGRKK
NT seq
2394 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaagcaaaagacttggtgccacgagaggctgaccgtttaggtacagtccaaggt
caccgagatggatttggatttgtgatccccgatgatggcggtgaagatatttttctttct
gaaagagaaatgtcccgtgtcatgcatagtgatcgagtgagtgtcagagtattagggaca
gaccgtcgtggccgtcctgaaggtcagatagttgaagtaattttgcatgccaataaagtg
gtgattggacgcctcttaaatgagaatggcgttctcattgttgctcctgaagataagcga
attggccacgatatcttgatgccaccaaaaggccaaggtaatgccaaattaggtcaagtc
gttagtgtagaaattattgattacccggatagctatcgtcaggcagtaggccgtgtagtg
gaggtcttaggggaaatcgatgatcctggtatggaaattgaaatcgccgtgcgtaagtat
ggcgttcctcatgtgttctctgttgcagcccaaaaagaagccgatgctttgcccgatacc
gttcagcaatccgatctagagggccgggttgatttacgggatgtacctttagttaccatt
gacggtgcagatgcacgtgattttgatgatgcggtctattgtgagcctgtgatgtatggc
aaagcgaaggcttggcgactgattgtggcaattgcagacgtatcgcattacgttaagcca
ggtcatccattggatgatgaaggattattacgggctacttcagtgtattttccgcggcga
gtaataccgatgctgcctgagaagatctcgaatggcttgtgctccctcaatccaggcgta
gatcgcctttgtatggtgtgtgactcggtagtggatacccatggcgaagtgcttgcttat
caactctatccagcggtgatgcattctgcgcaacgctttacttatgacgctgtttgggaa
gtcctctctaatagcaagggtcctgaggcttcgcgttttgcagagctccgacctttatta
acaaacctatattcgctctataaaattttgctagatgcacgccaaaaacggggtgctatt
gaatttgaaacaactgaaactcaaattattagcaatgagctgggtaaaattctgcgaatt
gagcctcgccttcgcaatgatgcacatcgcttaattgaagagtgcatgttgactgctaac
gtctgcgctgcagattttattgataaaaataagcatctcagtctataccgagtgcatggc
gagccttcagaagaaaagctcgcgaccttgcgtcaggtgctccgaacttctagtctgtca
ttggggggcggcgacaaacctaaacctaaagactattccaagttaatgcgagaaattaaa
gagcggcccgatgccaatatgttgcagacagttgtcttacgttcgatgcagcaagcaatg
taccagccggataacgaaggccactttggtctagcttacccagcgtattcacatttcacg
agtcctattcgccgatatccagatctcttaacccatcgtgttattaagtcgatcttagcg
aagaaaccatatgttcctgtattgccaccaacagtacctttaaatctcacgctacctcgc
aaaggtaagggtcgtgagaatgcggtgaatgcgaaaaaatcacatcatgatgcaaaagag
gctagtgcaaaaggtactcgattacctaaattaccaaaaggggcaaacgctgcactgcct
atctggggtcaactaggagttcattgctcttctaatgagcgacgtgctgatgaggcatcc
cgtgacgttgaggcttggttaaagtgctattacatgcgagaccatctcggacaagaatat
gcgggctctgtcactggggtagcatcctttggtctctttatacaactggaaaacctattt
gttgaaggcatggttcatgtcaccgagctagggggtgattattttcaatacgatgaagcg
cgccaagagctgcgtggagagagaacaggtattcgttatcgtttaggcgatcgtgtacac
gtattagttagtcgagtagatcttgatgcacgtaagatcgaatttagcttggtcaagtct
gtgggcctagagccaggtggcacgactaatcgtcgtcaaattatcttggcaagtgatact
ggtcgtcccaacaagaaggctgcgcctaaaaaaggcagatctggaagtaaggagcctcaa
agacacagtggcgtcaatgttaatgctgctaaatctgctggtaacttaggtgctaatcag
gctaaaggtaaagcaactaaatctaccaaacccagtaaacccactagatctgctggaaag
cctgctggcaccaagccgccagttcgaagcacgaatgccggaagaaaaaaatga
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