Polynucleobacter antarcticus: DCO16_07040
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Entry
DCO16_07040 CDS
T08332
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pani
Polynucleobacter antarcticus
Pathway
pani03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pani00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DCO16_07040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pani03019
]
DCO16_07040
Enzymes [BR:
pani01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DCO16_07040
Messenger RNA biogenesis [BR:
pani03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DCO16_07040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
AAA_22
UTP25_NTPase-like
P-loop_SecA
Cas3-like_C_2
HI1480
Motif
Other DBs
NCBI-ProteinID:
QKM62830
UniProt:
A0A6M9PIU4
LinkDB
All DBs
Position
1349285..1350568
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AA seq
427 aa
AA seq
DB search
MLFTDLGLSESILRAINEEGYTSPTPIQAKSIPAVLKGGDLLAAAQTGTGKTAGFTLPIL
QRLISAPVTGSGKRVLRVLILTPTRELAAQVQESVVTYGKYTGLKSTVIFGGVGANPQIK
AIAAGLDILVATPGRLLDLMSQNCVSLSAIEILVLDEADRMLDMGFLRDIKKILAALPKK
RQNLLFSATFSTEIKALADGLLNAPELIEVARSNSANEAIAQLIHPVDRNQKHPLLAHLI
KTNQWQQVLVFTRTKHGANKLVTQLEKDGITSMAIHGNKSQSARTKALADFKAEKITVLV
ATDIAARGIDIDQLPHVVNYDLPNVSEDYVHRIGRTGRAGSNGVAVSLVCVDEHEMLRDI
EKLIKQKLPQEVIVGFEPDPNAVAQPIQLRSQQHQQSRKPRTGGGSSEGGRKPAAKRTGA
PKRSFNR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgttatttacagatctcggtttatcagaatccattcttcgtgctattaatgaagaaggc
tataccagccccactcccattcaagcaaaatccatccctgcagttttaaaggggggagat
ttactcgcagctgcccaaacaggcactggtaaaacggcaggctttaccttgccgattttg
cagcgcttaatcagcgcgcctgtcactggcagcggtaaacgcgtattacgggtattaata
ttgacgcccactcgtgagctcgccgcccaagtacaagagtccgtagtgacctacggcaaa
tatacgggactaaagtcaaccgtgatctttggaggcgtaggtgccaatcctcaaattaaa
gcgattgctgcaggacttgatatcctggtagccacaccaggtcgtctactcgatctgatg
tcacaaaattgcgtatctcttagtgcgattgaaattctagtactcgatgaggcagatcgc
atgctagatatgggctttctaagggatattaaaaagatcttagctgcacttcctaagaag
cgtcagaacctactattttccgcaaccttttctactgaaattaaagctctggctgatggc
ttattaaatgccccagaactgattgaagttgcgcgtagcaatagtgccaacgaagcgatt
gcccaattaatccatccagttgatagaaatcagaagcaccctcttctagcacatcttatt
aagaccaatcaatggcaacaggtactggtctttacgcgtactaagcatggtgctaataaa
ttagttactcaattggaaaaagatggcatcactagtatggccattcatgggaataagagt
caaagtgcgcgtactaaagcgttggctgactttaaggctgaaaaaattaccgtcttagta
gcaacggatattgctgcacgcggaattgacattgatcaactgccccatgtcgtgaactat
gacttaccaaatgtctcagaagattatgttcaccgcattggtcgtacgggtagagccgga
tctaatggcgttgcagtttccttagtgtgtgtagacgaacatgaaatgctcagagatatt
gaaaaactcatcaaacaaaaacttccccaagaagtcattgtaggatttgagcctgaccct
aatgcagtggcacaacctattcagctcagaagccagcaacatcagcaatctagaaaacct
cggactggtggcggtagtagtgagggtgggcgcaagccagccgctaaacgcactggtgct
cctaagcgaagcttcaatagataa
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