KEGG   Pseudidiomarina andamanensis: D3795_01725
Entry
D3795_01725       CDS       T10146                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K11927  ATP-dependent RNA helicase RhlE [EC:5.6.2.7]
Organism
panm  Pseudidiomarina andamanensis
Pathway
panm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:panm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    D3795_01725
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:panm03019]
    D3795_01725
Enzymes [BR:panm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     D3795_01725
Messenger RNA biogenesis [BR:panm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     D3795_01725
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_30 PEPCK-like_mid UvrD-helicase
Other DBs
NCBI-ProteinID: QGT94969
UniProt: A0AA92ER30
LinkDB
Position
372220..373485
AA seq 421 aa
MTFSELGLCPEILSALTRQGYTEPTPIQAQAIPAVLAGKDVMAAAQTGTGKTAGFTLPIL
EMLKDNERAKANTARVLILTPTRELAAQVGESVMNYGAGLPLNYAVVFGGVKINPQMMKL
RKGVDILVATPGRLLDLYQQNAIRFPKLEMLVLDEADRMLDMGFIHDIKKIIKLLPAKRQ
TLMFSATFSDDIRTLAKSLVNSPVEISVAPPNATAERIDQIMYAAQKTQKPRMLMQILRN
LNLPQVIVFSRTKHGANRLVKQLDGDGFLAAAIHGNKSQGARTKALADFKAGKVQVLVAT
DIAARGLDIEKLPYVINFDLPQVAEDYVHRIGRTGRAGQVGHAISLVMDEEFKTLKAIEK
LIGQPIERHKLEGFADVELNGKTPVPKKAPRPPRRAGKPQGNSDKNSGGGKKPSRDRKRR
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgactttttctgaactcggactttgccctgaaattctatctgccctgacacgccaaggt
tatactgaacccacccctattcaagcccaagcaataccagccgtgttagctggtaaagat
gtgatggccgcagcgcaaaccggcaccggtaaaaccgctggctttaccttaccgattctt
gaaatgttaaaggataatgagcgtgcgaaagccaataccgcgcgtgtactcattttgacg
ccgacgcgtgaattagctgcgcaagttggtgaaagcgtaatgaattacggcgctggcttg
ccgctcaattatgccgtggtattcggtggcgtgaagattaatccacagatgatgaagtta
cgcaagggcgtcgatattttggtggcaacgccaggccgattgctcgacctctaccagcaa
aacgccatacgctttccaaaactcgaaatgctagttcttgacgaagctgaccgtatgctc
gatatgggcttcattcatgacattaaaaaaatcatcaagttactgccagcgaagcgccaa
acgttgatgttttcggctacgttctcggacgatattcgtacgcttgcaaaaagcctggtg
aatagcccagtagaaattagtgtcgcgccgccaaatgcgaccgctgagcgcattgatcaa
atcatgtatgccgcgcagaagactcagaaaccgcgcatgctaatgcaaattctgcgcaac
ctcaatttgccgcaagtgattgtgttctcgcgcactaaacatggcgctaaccgcttggta
aaacagctggatggcgacggatttttagctgctgcaattcatggcaataaaagccaaggc
gcacgcaccaaagctttagctgactttaaggccggcaaggtacaagtgttagttgcgacg
gacattgccgcccgtggcttagatatcgaaaaactgccgtatgtcatcaattttgatttg
ccgcaagtggccgaagattacgtgcaccgtattggtcgtactggccgcgcagggcaggtt
ggacacgccatttcgctggtcatggacgaagagtttaaaacactcaaagccatcgagaaa
ctaattggccagccaattgagcgccacaaacttgaaggttttgccgatgttgaattaaac
ggcaaaacaccggtccctaagaaagcgccacgcccgccgcgtcgcgctggaaagccacag
ggtaatagtgataaaaattctggtggcggtaaaaagccatcgcgtgaccgcaagcgtcga
acttaa

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