Pandoraea sp. NE5: PanNE5_11470
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Entry
PanNE5_11470 CDS
T10412
Name
(GenBank) hypothetical protein
KO
K16516
LysR family transcriptional regulator, regulator for genes of the gallate degradation pathway
Organism
pann Pandoraea sp. NE5
Brite
KEGG Orthology (KO) [BR:
pann00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pann03000
]
PanNE5_11470
Transcription factors [BR:
pann03000
]
Prokaryotic type
Helix-turn-helix
LysR family
PanNE5_11470
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HTH_1
LysR_substrate
HTH_30
HTH_28
HTH_AsnC-type
HTH_Tnp_ISL3
HTH_36
Motif
Other DBs
NCBI-ProteinID:
BDD91707
LinkDB
All DBs
Position
complement(1216703..1218043)
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AA seq
446 aa
AA seq
DB search
MSIDTSISLTTPLAAPQLACHERGTWSRAPQSNEATLLCRKLRGLRAMVAVLECDSVARA
ARMLHLSQSAVARSISDIEAELGFPLFHRSARGLTPNAAGQRLGVRATRALAELANGYRD
AFAATASQADGGARAASRFAAVVAPQQLTSFIAVAELGSGPLAASRLQCSQPTIQRNLDQ
LEDLIGIKLFRRTPRGTRLTDEAQALLGPVKRALAELAIAEDELAPFGGRQQGTVIVAAL
PLSSGFLLPKAIDSLLYQSPYLNVTVVDGTYEALIRQLRQADVDMIVGALRASDVPQDIR
QEALFEDHLSVVARADHPCLSSGRTPTLAELAEYGWVSPLPSTPARRVFERVFHAEGLAL
PRTQVHASSSPVVRGLLSSSDRLALLSPVQITSELRTGELAVVPVPLQHARRAIGVATRR
DGLLSPAAEQLLDELRALAPTMQHPT
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgtccatcgacacgtcgatcagcctgaccacgccgttggccgcccctcaactcgcctgt
cacgagcgcggcacatggagccgtgcgccacagagcaacgaggcgacgctcctgtgccga
aaattgcgcggcctgcgcgcgatggtcgccgtgctggaatgcgattcggtagcgcgtgcg
gcgcgcatgctgcatctctcacagtcggccgttgcacgctcgatctccgatatcgaggcg
gagctgggctttccgttgtttcaccgcagcgcgcgcggcctgacgccgaacgcggccggt
cagcgcctgggtgtgcgcgccacgcgcgcactcgcggagttggccaacgggtatcgcgac
gcgtttgccgccacggcgtcgcaggccgacggcggtgcgcgggccgcaagtcgcttcgcg
gcggttgtcgctccccagcaactcaccagcttcatcgcggtcgcggagctgggtagcggg
ccgctcgcggcgagccgcctgcaatgctctcaaccgaccatccagcgcaatctcgatcag
ctcgaagatctgatcggtatcaagctgtttcgacgcacgccgcgcggcacgcgtctgacg
gacgaggcgcaggcgttgctcggcccggtcaagcgcgcgctggccgagctggcgatcgcc
gaagacgaactcgcgccattcggggggcgtcagcaaggcaccgtgatcgtggccgcgttg
ccgctgtccagtggctttctgctgcccaaagccatcgacagtctgctgtaccagtcgccg
tatctgaatgtgacagtggtggacggcacctacgaagccctgattcgccagttgcgacag
gccgacgtcgacatgatcgtcggcgccttgcgagcgagcgacgtgccgcaggacattcgc
caggaggcgctgttcgaggatcacctgtcggtggtcgcccgtgccgaccatccctgcctg
tcgtcgggccgcacgcccacgctcgcggaactggccgagtacggctgggtgagcccgctg
ccctccacgcccgcgcgccgggtattcgagcgcgtgtttcatgcggagggtctggcattg
ccgcgtacgcaggtgcacgcgagcagttcaccggtggtacgcgggttattgtcatcgagc
gaccggcttgcgttgctctcgccggtgcagatcacgtcggagttgcgcaccggcgagctg
gccgttgtaccggtgccgttgcagcatgcacgtcgtgcgatcggtgtcgccacgcggcgc
gacggcttgctgtccccggccgctgagcaattgctcgacgagctgcgcgcgctggccccg
acaatgcagcatccgacgtaa
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