Pandoraea sp. NE5: PanNE5_11740
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Entry
PanNE5_11740 CDS
T10412
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
pann Pandoraea sp. NE5
Pathway
pann00300
Lysine biosynthesis
pann00470
D-Amino acid metabolism
pann01100
Metabolic pathways
pann01110
Biosynthesis of secondary metabolites
pann01120
Microbial metabolism in diverse environments
pann01230
Biosynthesis of amino acids
Module
pann_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pann00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
PanNE5_11740 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
PanNE5_11740 (dapF)
Enzymes [BR:
pann01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
PanNE5_11740 (dapF)
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Paralog
GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
Motif
Other DBs
NCBI-ProteinID:
BDD91734
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All DBs
Position
complement(1245393..1246277)
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AA seq
294 aa
AA seq
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MRVGLLHYNSAMKLKFTKMQGAGNDFVVIDGISQSIDFTPDQWRALADRHFGVGADQLLL
VERSTQPGVDFRYRIFNADGGEVEHCGNGARCFVKFVRDTGLTDKRTVRVEVQQGLITLT
MRDDGQVSVDMGAPILTASDVPFDASGLAGRREGDDTLWPLDVAGKTTWISVVSMGNPHA
VQVVENVDTAPVETDGPLIERHARFPRRVNAGFLQVVDKHQARLRVYERGAGETLACGTG
ACAAAVAGIRRGLLAAPVAIETHGGTLTIDWDGASGPVIMTGPATTVFEGTIEI
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgtcggccttctccactacaatagcgccatgaagctcaaattcaccaagatgcag
ggtgccggcaacgacttcgtcgtgatcgacggcatctcgcaatccatcgatttcacgccc
gaccagtggcgggcgctcgccgaccgccatttcggcgtcggcgcagaccagctcctgctc
gtcgaacgctcgacgcagcctggcgttgacttccgctatcgcatcttcaacgccgacggc
ggtgaggtggagcattgtggcaatggggcgcgctgcttcgtcaagttcgtgcgcgacacg
gggttgaccgacaagcgcacggtgcgcgtcgaggtgcagcagggcttgatcacgctcacg
atgcgcgacgacggccaggtcagcgtggacatgggcgcgccgatcctcacggcgtcggat
gtgccgttcgacgccagcgggctggcaggtcgtcgcgagggcgacgacacgctctggccg
ctcgacgtggccggcaagacgacgtggatttccgtggtctcgatgggcaatccgcatgcc
gtgcaggtggtggagaacgtcgataccgcgccggtggaaacggacggcccgctgatcgag
cgtcatgcgcgcttcccgcgccgcgtgaatgcgggcttcctgcaggtggtggacaagcat
caggcgcgtctgcgcgtgtacgagcgcggtgcgggcgagacgctcgcctgcggcaccggc
gcatgcgcggcggcagtggcaggcatccgccgcgggctgctggccgcgcccgtggccatc
gaaacgcacggcggcacgctcaccatcgactgggacggcgcaagcggtcccgtcatcatg
acgggacccgccaccacggtcttcgaagggacgatcgagatctga
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