Pandoraea sp. NE5: PanNE5_18980
Help
Entry
PanNE5_18980 CDS
T10412
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
pann Pandoraea sp. NE5
Brite
KEGG Orthology (KO) [BR:
pann00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pann03000
]
PanNE5_18980
Transcription factors [BR:
pann03000
]
Prokaryotic type
Helix-turn-helix
Other families
PanNE5_18980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA_lid_14
HTH_8
GAF
HTH_30
AAA_5
PAS_4
HTH_50
HTH_23
HTH_29
HTH_22
PAS_8
HTH_7
HTH_1
PAS_9
AAA_2
Diguanyl_cycl_sensor
HTH_28
HTH_20
AAA_16
HTH_17
HTH_Tnp_1
RWP-RK
HTH_psq
Motif
Other DBs
NCBI-ProteinID:
BDD92458
LinkDB
All DBs
Position
2090485..2092389
Genome browser
AA seq
634 aa
AA seq
DB search
MPAKTESAHARRVQDVVQGHLSSVATATDPNIASSWRRCLDTYALDPGARMTPRVLASSQ
LRERRSAMERLCHVSMPVLERLQRQLMNPRQAVLLTAPDGVILDSRLHDDTRDDFHRAGL
WPGADWSESCEGTNGIGTCVVERAPVIICQQDHFRALHTPLTCTASPVFAPQGDLLAVID
VSSTSADETRQSQFHTLALVNLSAKVVERDYFFQHYRDEWLLQLQEPGDHLGDFAQALLA
FDDAGHILAANQSALNRLGATRDALVGTRVDRWFAQALDTLLAQAHPAPSACWPIRTHTG
EALVAMVRSPLRAARRATRAVSVPHEVAVEPFSDPVLAREFSRACRVFAHDVPVLIRGET
GSGKEVFARAVHAASARASGPFVALNCAAIPESLIESELFGYVGGSFTGARKEGMAGKLW
QANGGTLFLDEIGDMPFAMQTRLLRVLEDRRVSPLGGGEPVPLDIRVLSATHRDLSERIA
ERQFREDLFYRLSGLEVRVPSLRERDDKVDVMHTLLAQACPQGPIGLTDAARDRLCAYPW
PGNVRQMRSVIRTLVALSERGVITLDDLPDALRDASGLPPVDPPAEAPLEAAERQALRTT
LDACQGQVSAAARKLGVSRNTLYRKLKRFGLLRG
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgccagccaagacagaatccgcgcacgcgcgtcgtgtgcaggatgtcgtacaaggtcac
ctgtcgtccgtcgcgacggcgacggacccgaacatcgcgagttcatggcgccgatgtctc
gacacctacgcgctcgatccgggggcgcgcatgacgccgcgggtgttggcgtcgtcgcaa
ctgcgtgagcggcgcagcgcgatggagcggctgtgtcatgtctccatgccggtgctcgag
cgtttgcagcgtcagttgatgaatccgcgccaggccgtgctgctcacggcccctgacggc
gtgatcctcgactcccggctgcacgacgacacgcgcgacgacttccaccgcgcaggcttg
tggccgggcgccgactggagcgagtcgtgcgaagggaccaacggcatcggcacctgcgtg
gtcgagcgtgcgcccgtcatcatctgccagcaagatcacttccgcgcgctgcacacgccg
ctcacctgtacggcaagtcctgtcttcgcgccgcaaggggacttgcttgccgtgatcgat
gtctcgtcgacgagcgccgatgagacccggcaaagccagtttcatacgctggcgctcgtg
aacctgtcggccaaagtcgtggagcgcgactattttttccagcactatcgcgacgagtgg
ctgctgcagttgcaggaacctggcgaccatttgggtgacttcgcgcaagcattgcttgcg
ttcgacgacgccggccatattctcgctgccaatcagagcgcactgaatcgcctcggcgcg
acgcgcgacgcgctggtgggcacgcgcgtggatcgatggttcgcgcaagcgctcgacacc
ctgctcgcgcaagcgcatccggcgccgagtgcgtgctggccgattcggacgcatacgggc
gaggcgctggtggcgatggtgcgttcgccgttgcgtgcggcgcgccgggcaacgcgtgcg
gtgagcgtgccgcatgaggtggcggtcgagccgttttccgatccggtgctggcgcgtgaa
ttttcgcgtgcgtgccgcgttttcgcgcatgacgtgccggtgctgattcgcggtgagacc
ggcagcggcaaggaagtcttcgcgcgcgccgtgcatgcggcaagcgcacgggccagcggc
ccgttcgtggcgttgaattgcgcggcgattccggagtcgctgatcgagagcgaactgttc
ggctacgtgggcggcagctttaccggggcgcgcaaggaagggatggccggaaagctatgg
caagccaacggcggcacgctgtttctcgacgaaatcggcgatatgccgttcgccatgcaa
acccgtttgctgcgcgtgctcgaagaccgcagggtgtcgccgctcggcggtggcgaaccg
gtgccgctcgatattcgcgtgctcagtgcaacgcaccgagatctgtccgaacggattgcc
gagcggcagttccgcgaagatcttttctatcggttgagtggcctcgaggttcgcgtgccg
tcgctgcgcgagcgcgacgacaaagtcgacgtgatgcacacgctgctggcgcaggcctgc
cctcaaggtcccatcggcctgacggacgccgcgcgggatcggctgtgcgcgtatccgtgg
cccggcaatgtgcgtcagatgcgcagcgtgattcgaacgctggtcgcgctgagcgagcgc
ggcgtcatcacgctggacgacctgccggacgcattgcgcgacgcatcggggcttcccccg
gtcgacccgccggcggaggcgcccctggaagcggcggaacgccaggcgttgcgcacaaca
cttgatgcctgtcaggggcaggtcagtgccgcagcgcgcaagctcggcgtgagtcggaat
acgctttatcgaaagttgaagcgattcggcctgctgcgcggataa
DBGET
integrated database retrieval system
