Pandoraea sp. NE5: PanNE5_24890
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Entry
PanNE5_24890 CDS
T10412
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pann Pandoraea sp. NE5
Pathway
pann03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pann00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PanNE5_24890 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pann03019
]
PanNE5_24890 (rhlE)
Enzymes [BR:
pann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PanNE5_24890 (rhlE)
Messenger RNA biogenesis [BR:
pann03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PanNE5_24890 (rhlE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
P-loop_SecA
AAA_22
ERCC3_RAD25_C
HEM4
Motif
Other DBs
NCBI-ProteinID:
BDD93049
LinkDB
All DBs
Position
2755213..2756724
Genome browser
AA seq
503 aa
AA seq
DB search
MADVNAVPTPGFDSFGLHADILRAIAEQGYTQPTPIQAQAIPVVLSGRDVMGAAQTGTGK
TASFSLPIIQRLLPEANTSASPARHPVRALILTPTRELADQVAENVRAYAGHTPLRNTVV
FGGVDMNPQKDALRRGVEILIATPGRLLDHVEQKTVNLSQVKMLVLDEADRMLDMGFLPD
LQRILNLLPKQRQTLLFSATFSNEIKKLASSYLTNPLTIEVARRNATADNVEQVVYQVDE
DDKRAAVVQILKERDLKQVIVFVNSKVGASRLARQLEREGIVTAAIHGDKSQNERMQALE
AFKQGGIQALVATDVAARGLDISDLPGVINYDLPYNPEDYVHRIGRTGRAGASGEAISLC
APDERKQIVEIEKLIKHELKRGELVLERRSRSRDDRSERVVDRGDRGDRSERGERSDRSE
RHSRHDGLRASRSGGSAAPRRVRPEDEFFYKPYEPSPSASEPQHDARSSQESAVPTSFGG
LPDKAPKRQVAALLAGFPRKASH
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgtaaatgctgttccgacccccggcttcgatagctttgggctgcatgcggac
atcttgcgggccatcgccgagcagggctacacccagccgacgccgatccaggcgcaggcc
atcccggtggtgctgtccggacgtgacgtcatgggcgccgcgcaaacgggaacgggcaag
accgccagcttttcgctgccgatcatccagcgcttgctgcccgaagccaacacgagtgca
tcgcctgcccgtcacccggtgcgtgcgctgattcttacgccgacgcgcgaacttgccgat
caggttgccgagaacgtgcgcgcctacgcggggcacacgccgttgcgcaatacggtggtg
ttcggcggcgtcgacatgaatccgcagaaggatgcgttgcgacgcggcgttgagatactg
atcgccacgccaggtcgcttgctcgatcacgtcgaacaaaagacggtgaatctgagccag
gtgaagatgctcgtgctcgacgaggccgaccgcatgctggacatgggcttcctgcctgac
cttcagcgcattctgaatttgctgccgaagcagcgccagacgcttctgttttcggccacg
ttctcgaacgagatcaaaaaactcgcgtcgagctatctcacgaatccgctcacgatcgaa
gtcgcccgccgcaatgccacggccgacaatgtcgagcaggttgtctatcaagtggatgaa
gacgacaagcgcgccgccgtggtgcagattctgaaggagcgcgatctcaagcaggtcatc
gtgttcgtcaacagcaaggtcggtgcgagccgactggcgcgccagttggagcgcgagggc
atcgtaacggccgcgattcacggcgacaagtcgcagaacgagcgtatgcaagcgctcgaa
gcgttcaagcaaggcggtattcaggcgcttgtggccaccgacgttgcagcgcgcgggctg
gacatctcggatctgccgggcgtgatcaactacgatctgccgtacaacccggaagactat
gtgcaccgtatcggtcgcacgggccgcgcgggtgcgtcgggtgaggcaatctcgctgtgc
gcccccgacgaacgcaagcaaatcgtggaaatcgaaaagctgatcaagcacgaactcaag
cgtggagagttggtgctggagcgtcgtagccggtcgcgcgacgaccgcagcgagcgcgtt
gttgaccgcggcgatcgcggtgaccgtagtgagcgcggtgagcgtagtgaccgtagcgag
cgccacagtcgccacgacggcctgcgggccagccgtagcggcggcagtgccgcaccgcgc
cgtgttcgtccggaagacgagttcttctacaagccgtacgagccgtcgccgtcggcgagt
gagccgcagcatgatgctcgttcgtcgcaggagtccgctgtgccgacgtcgtttggtggg
ttgcctgacaaggcgccgaagcgtcaggtggcggcgttgcttgccggcttcccgcgcaag
gcgagccactga
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