Pandoraea sp. NE5: PanNE5_24950
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Entry
PanNE5_24950 CDS
T10412
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pann Pandoraea sp. NE5
Pathway
pann03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pann00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PanNE5_24950 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pann03019
]
PanNE5_24950 (recQ)
03400 DNA repair and recombination proteins [BR:
pann03400
]
PanNE5_24950 (recQ)
Enzymes [BR:
pann01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PanNE5_24950 (recQ)
Messenger RNA biogenesis [BR:
pann03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PanNE5_24950 (recQ)
DNA repair and recombination proteins [BR:
pann03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PanNE5_24950 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
NepR
Motif
Other DBs
NCBI-ProteinID:
BDD93055
LinkDB
All DBs
Position
complement(2764297..2766117)
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AA seq
606 aa
AA seq
DB search
MASALEVLRTVFGYNAFRGDQAAIVDHVADGGDALVLMPTGGGKSLCYQIPALLRPGIGI
VVSPLIALMQDQVDALLQAGVRAAYLNSSLGFDEALDTERRAARGELDLLYVAPERLLTD
RFLDLLDRLDARGQLALFAIDEAHCVSQWGHDFRPEYIQLSALHERYPRVPRIALTATAD
AATREDIQTRLGLTEARLFVSSFDRPNIRYEIVDRDNPRKQLLAFLGRHRGEAGIVYCLS
RKKVEETAAWLETQGIPALPYHAGLDADVRRTHQQRFLREEGLVMSATVAFGMGIDKPDV
RFVAHLDLPKSLEAYYQETGRAGRDGEPAEAWMTYGLNDVVVHRSRIDESNAPDQQKRIE
RQKLDALLGYCEAPRCRRTVLLSYFGESSAPCGNCDVCLSPPEVFDGTIAAQKALSAILR
TGQRFGAGHLVDLLRGRSTDKIRQFGHEALPTFGVGGELDDQGWRAVFRQLIAHGIIEPD
SSQYGALTLNAAARPVLKGETTLSLRRQRASVGKKSRFAGYASSQAIELDTADQQLFEKL
RAWRQEIAKTQQVPAYVILHDRTLRELAQRRPRHREGLADITGLGEAKIERYGEALVELL
NDVANA
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcgcactcgaagtcctccgtaccgtattcggctataacgcattccgtggcgat
caggccgctatcgtcgaccacgtggccgacgggggcgacgcgcttgtgctgatgccgacc
ggcggcggcaagtccctgtgttatcagatccccgcgttgctgcgccccggcatcggcatc
gtcgtctcgccgctcatcgcgctcatgcaggaccaggtcgatgcgctgctgcaagccggg
gtgcgcgcggcctatctgaactccagtctcggcttcgacgaagcgctcgataccgagcgc
cgcgccgcccgcggcgaactcgatctgctctacgtggcgcccgagcgcttgctgaccgat
cgttttctcgacctgctcgaccgactcgacgcgcgcgggcaactggcgctgttcgccatc
gacgaggcgcattgcgtctcgcaatgggggcatgacttccgtcccgaatacattcagctc
tcggcacttcacgaacgttatccgcgcgtaccgcgcatcgcgctgaccgccacggcggac
gccgcgacgcgcgaggacatccagacgcggcttggcctgaccgaggcgcggttgttcgtc
tcgagcttcgaccggccgaacattcgctacgagatcgtcgatcgcgacaatccccgcaag
cagttgctcgcgtttctggggcggcaccggggcgaggcgggcatcgtctattgcctgtcg
cgcaagaaggtggaagaaaccgccgcctggctcgagacgcagggcattccggccctgccc
tatcacgcagggctggacgcggacgtgcgccgcacgcaccaacagcgcttcctgcgcgag
gaagggctggtgatgtcggccacggtcgccttcggcatgggcatcgacaagcccgacgtg
cgtttcgtcgcccacctggatttgcccaagagcctcgaagcctactatcaggagacgggg
cgcgcggggcgcgacggcgaacccgccgaagcctggatgacgtatgggctgaacgacgtc
gtggtgcatcgcagccgcatcgacgagtcgaacgctcccgaccagcaaaagcgcatcgaa
cgccagaaactcgacgccctgctcggctattgtgaagcgccgcgctgccgccgcaccgtg
ctgctgtcgtattttggcgaatcgagcgcgccgtgcggcaactgcgatgtctgcctgagt
ccgcccgaagtcttcgacgggaccatcgccgcccagaaggccctctcggccatactgcgt
acgggccagcgttttggcgccgggcatctggtcgatctgctgcgcgggcgcagcaccgac
aagattcgtcagttcgggcacgaagccctgccgacgttcggcgttggcggtgaactcgac
gatcaaggctggcgcgcggtgttccggcagttgatcgcgcatggcatcatcgagcccgac
agcagccaatacggcgcgctgacgctcaacgcggcggcacgcccggtgctcaagggggaa
acgacactgtcgttgcggcgccagcgggcctccgtcggaaagaagagccgttttgccggg
tatgcgtcgtcgcaggcgatcgagctggatactgccgatcagcaactgttcgaaaagctg
cgggcctggcggcaggagatcgccaagacgcagcaggtgcccgcctacgttatcctgcac
gaccggacactgcgcgaactcgcccagcgtcgcccccgccatcgcgaggggttggccgat
atcaccggactcggcgaagccaagatcgaacgctacggtgaagcgcttgtcgagttgctc
aacgacgttgccaacgcttga
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