Pandoraea sp. NE5: PanNE5_34420
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Entry
PanNE5_34420 CDS
T10412
Symbol
hupB_1
Name
(GenBank) DNA-binding protein HU-beta
KO
K03530
DNA-binding protein HU-beta
Organism
pann Pandoraea sp. NE5
Brite
KEGG Orthology (KO) [BR:
pann00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pann03032
]
PanNE5_34420 (hupB_1)
03036 Chromosome and associated proteins [BR:
pann03036
]
PanNE5_34420 (hupB_1)
03400 DNA repair and recombination proteins [BR:
pann03400
]
PanNE5_34420 (hupB_1)
DNA replication proteins [BR:
pann03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
PanNE5_34420 (hupB_1)
Chromosome and associated proteins [BR:
pann03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
PanNE5_34420 (hupB_1)
DNA repair and recombination proteins [BR:
pann03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
PanNE5_34420 (hupB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_1
UBA_HYPK
HU-CCDC81_euk_2
Motif
Other DBs
NCBI-ProteinID:
BDD94002
LinkDB
All DBs
Position
3823964..3824236
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AA seq
90 aa
AA seq
DB search
MNKTELIDHIAGEADISKAAAGRALEALVGAVKKSLKKGDSVTLVGFGTFLVAKRAARTG
RNPRTGAAIKIKAAKVPKFRPGKVLKDTLN
NT seq
273 nt
NT seq
+upstream
nt +downstream
nt
gtgaacaagacggaactgatcgatcatatcgcgggtgaagcagacatctcgaaagcggct
gccggtcgggcacttgaagcattggtgggtgcggtaaaaaaatcgctgaagaagggagat
agcgtgacgttggtcggcttcggcaccttcctcgtggccaagcgtgcggcgcgtaccgga
cgcaatccgcgcacgggggccgcgatcaagatcaaggcagcgaaggttccgaaatttcgc
cctggcaaagtattgaaagatacgttaaactga
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