Pandoraea sp. NE5: PanNE5_41120
Help
Entry
PanNE5_41120 CDS
T10412
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pann Pandoraea sp. NE5
Brite
KEGG Orthology (KO) [BR:
pann00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pann03009
]
PanNE5_41120 (rlmD)
Enzymes [BR:
pann01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
PanNE5_41120 (rlmD)
Ribosome biogenesis [BR:
pann03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
PanNE5_41120 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
Methyltransf_ANTKMT
Cons_hypoth95
Methyltransf_23
Methyltransf_11
Methyltransf_15
TRM5-TYW2_MTfase
Methyltr_RsmB-F
Methyltransf_32
MTS
TRAM
Motif
Other DBs
NCBI-ProteinID:
BDD94672
LinkDB
All DBs
Position
complement(4603821..4605359)
Genome browser
AA seq
512 aa
AA seq
DB search
MTRSSRNSSRGRPAAEPGIIDIESLDMEARGVGRTAPEGEPGAPDYKPGKVIFVEGALPG
ERVTYLSYRRKPKFEQAEAIDVLRASPMRAKPQCPHFGKCGGCSMQHLEPRAQIAIKQRV
LEDNLARLGKVKAEAILRPIQGPDWGYRFRARLTVRYVPKKGGVLIGFHERRSSYVADMD
SCEVLPRHVSDMLVPLRRLVESLSIRERLPQIELAIGAEVTALVLRILEPLTPADEDILR
AFAEANHVQFWVQPKGPDTAVPFYPLDPELHYTLPEYQIRMPFKPTDFTQVNHQINRVLV
HRALRLLAPASHERVLDLFCGLGNFTLPLARRAGTVMGIEGSTALTERALANAQRNGVAE
RTEFACRNLFDITPEDIRALGAFDRYLIDPPREGALAVSKALAELAQQGYDGLPKRIVYV
SCSPATLARDAGVLVHEAGYRLTLAGVVNMFPHTSHVESMAVFEHESIGQPWVPTVRVSA
SDASADQADQGIEGVEAIAGATGGDGVIHDEA
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
gtgacccgctcctcccgaaattcctcacgcggccggccggctgccgagcccggcattatc
gatatcgaatcgctcgacatggaagcgcgcggcgtcggccgcaccgcgcccgagggcgag
ccgggtgcaccggactacaagcccggcaaggtgatctttgtcgaaggcgcgctgccgggc
gaacgcgtcacctatctcagctatcgtcgcaaacccaaattcgagcaggccgaagccatt
gatgtgctgcgcgccagcccgatgcgcgccaagccacagtgtccgcacttcggcaagtgc
ggtgggtgctcgatgcagcatctcgagccgcgtgcacaaatcgcaatcaagcagcgtgtg
ctcgaggacaatctggcgcgtctgggcaaggtgaaggccgaagccatccttcggcccatt
caggggccagactggggctatcgcttccgtgcacgtctgacggtgcgatacgtcccgaaa
aaggggggcgtgctcatcggattccatgagcgcaggagcagctacgtggccgacatggac
tcgtgcgaagtgctgccccgccacgtttctgacatgctcgtgccgttgcggcgcctggtc
gagtcgctgtccattcgggaacgtctgccgcagatcgaactggcgatcggcgccgaggtg
acggcgctcgtgctgcgtattctcgagcccctcacgccagcggacgaggacattctgcgc
gccttcgctgaggcaaatcacgtccagttctgggttcaaccgaaggggccggacaccgcg
gtgccgttctacccgctggacccggaattgcattacaccctgccggaatatcagatccgg
atgccgttcaagccgacggacttcacgcaggtcaaccatcagatcaaccgtgtgctcgtg
catcgcgcgttgcgcttgctggcgccggcgtcgcatgagcgtgtgctcgatctgttctgc
ggcctggggaacttcacgctgccactggcgcgtcgcgccggcaccgtcatggggatcgag
ggcagcaccgcgctcacggagcgtgcgctcgcgaacgcgcaacgtaatggcgtggccgaa
cggaccgaattcgcgtgccggaacctgttcgacatcacaccggaggatattcgcgcattg
ggtgcgtttgaccgctacctgatcgatccgccgcgcgaaggggcactggcggtatcgaag
gcgctcgccgaattggcgcagcagggctacgacggcctgcccaagcgcatcgtctacgtt
tcctgcagtccggcaacgctggcgcgtgacgcgggcgtgctcgtgcatgaagcgggctat
cgcctgacgctggccggggtggtgaacatgttcccacacacgtcgcacgtcgagtcgatg
gccgtgttcgagcatgagagcatcgggcagccgtgggtgccgacggtgcgggtgtcggcg
tcggatgcttccgccgatcaggccgatcagggcattgagggcgttgaggcgattgccggt
gctaccggtggcgacggcgtgattcacgacgaggcctga
DBGET
integrated database retrieval system
