Pandoraea sp. NE5: PanNE5_41930
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Entry
PanNE5_41930 CDS
T10412
Name
(GenBank) AraC family transcriptional regulator
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
pann Pandoraea sp. NE5
Pathway
pann03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
pann00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PanNE5_41930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pann03000
]
PanNE5_41930
03400 DNA repair and recombination proteins [BR:
pann03400
]
PanNE5_41930
Enzymes [BR:
pann01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
PanNE5_41930
Transcription factors [BR:
pann03000
]
Prokaryotic type
Helix-turn-helix
AraC family
PanNE5_41930
DNA repair and recombination proteins [BR:
pann03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
PanNE5_41930
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HhH-GPD
HTH_AraC
HHH
Motif
Other DBs
NCBI-ProteinID:
BDD94753
LinkDB
All DBs
Position
4696886..4698373
Genome browser
AA seq
495 aa
AA seq
DB search
MPLDPEVCYKAVSARDRRFDGWFFVGVSSTGIYCRPVCNVRTPRFENCSFHGSAAAAEKA
GFRPCLKCRPELAPGLARFDATRELADAAAAMIDEGFLNHASLPALAARIGITERHLRRI
FADEFGVSPVEYAQTQRLLLAKRLLTDTAMPVTDVALAAGFGSVRRFNGLFKTRYGFAPG
RLRLNARHDALPDSDLVFQLAYRPPFAWHALLDFLGNRAIEGVERREGDVYTRTLSLERQ
DGQTATGWCRVTPLPDRHALQVTLPPTLAGSVPQVLAKLRHLFDLGARPDVIDAHLGPLA
AATPGLRVPGAVDGFEIAVRAIVGQQITVKGARRLLGRLAQRFGTPLPTPAHGLTHTFPS
AAQLLAVRPDALGEAGIIRSRIAAIHGVAQVIVDGRLRLDPLAPLDATMAALLAIKGIGP
WTAQYIAMRALGSPDAMPVDDLVLRQALGAADGRAVAARAAQWAPWRAYAALHVWRAAAQ
GPAGQPVETLQEVCA
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
atgcccctcgatcccgaagtctgctacaaggccgtcagcgctcgcgaccggcgcttcgac
ggctggttcttcgtcggcgtgtcgtcgaccggcatctactgccggccggtgtgcaacgtg
cgcacaccccgctttgaaaattgctcgttccatggcagcgccgccgccgcagagaaggct
ggctttcgtccgtgcctgaaatgccgtcccgaactcgcgcctggcctcgcgcgtttcgac
gccacccgcgaactcgccgacgccgcagccgccatgatcgacgaaggcttcctcaatcac
gccagcctccccgccctcgcggcccgaatcggcatcacggaacgccatctgcgccgcatc
tttgcggacgaattcggcgtctccccagtcgagtacgcgcagacgcaacgacttctgctg
gccaagcgcctgctcaccgatacggccatgcccgtgaccgacgtcgccctcgccgccggc
ttcggcagcgttcgacgcttcaacggtctcttcaagacccgctacggcttcgcccccggc
cggctgcgcctgaacgcgcgccacgatgcccttcccgacagcgatctcgtgttccagctc
gcttatcgaccgccctttgcctggcacgccctgctcgattttctcggcaaccgtgccatc
gaaggcgtcgagcggcgcgagggcgacgtctatacccgcacgctgagcctcgaacgccag
gacgggcagacggccacgggctggtgtcgcgtcaccccgctaccggatcgccatgcgctt
caggtgacattgccgcccacgctggccggcagcgtgccgcaggtgctggccaagcttcga
catttgttcgatctcggcgcgcgcccggacgtaatcgacgctcacctcggcccactcgcc
gcggcgacgcccggcctgcgcgtcccgggggcggtcgatggtttcgagatcgccgtgcgc
gccatcgtcggccagcagatcaccgtcaaaggcgcccgacgcctgctcggccggctcgcg
caacgcttcggcacgcccctgcccaccccagcgcacggtctgacgcacacgttcccgagc
gccgcgcaactcctcgccgtgcgccccgacgccctcggcgaagccggtatcattcggagt
cgcatcgccgccattcacggggtggcgcaggtgatcgtcgatggccgcttgcggctggat
cccctcgcgcccctggacgccacaatggcggctctgctcgcgatcaagggcatcggcccc
tggacagcgcaatacatcgccatgcgtgcgctgggctctcccgatgcaatgcccgtcgac
gatctggtgctgcgtcaggcgcttggcgcggccgacgggcgcgccgtcgccgcgcgggcg
gcacaatgggcgccatggcgagcgtatgccgcgctgcacgtctggcgcgcggcagcacag
ggaccggcgggccagccggtcgagactttgcaggaggtgtgcgcatga
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