Pandoraea sp. NE5: PanNE5_42630
Help
Entry
PanNE5_42630 CDS
T10412
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
pann Pandoraea sp. NE5
Pathway
pann03410
Base excision repair
pann03430
Mismatch repair
pann03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pann00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
PanNE5_42630 (recJ)
03430 Mismatch repair
PanNE5_42630 (recJ)
03440 Homologous recombination
PanNE5_42630 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pann03400
]
PanNE5_42630 (recJ)
DNA repair and recombination proteins [BR:
pann03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
PanNE5_42630 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
PanNE5_42630 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PanNE5_42630 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Glyco_transf_4
T3SS_ExsE
Motif
Other DBs
NCBI-ProteinID:
BDD94823
LinkDB
All DBs
Position
4768696..4770393
Genome browser
AA seq
565 aa
AA seq
DB search
MTDIVTRHVDDATANALARDGVHPVLARLFASRGVAETAETETALARLIPPTQLKGAQEA
AAFLADAIAAGKRMLVVADYDCDGATACAVAVRGLRMFGAKVEYLVPNRFEYGYGLTPEI
VALAAQGKAGPPDVLITVDNGIASLDGVAAAQALGIEVVVTDHHLPGSELPNARCIVNPN
QPGCAFPSKNLAGVGVMFYVLLALRAELRTRGAFEAREQPRLDTLLDLVALGTVADVVKL
DANNRILVAQGLSRMRAGRMHPGINALFRAAARNARQAGSFDLGFGLGPRLNAAGRLADM
SLGIECLLTDDDARAWTLAQELDAMNRERREIEAGMQQEALADLARFDPRAATTLCAFNE
TWHQGVIGIVAARLKEKFYRPTIVFAPGDDGQIKGSGRSIPGFHLRDALDLVTKREPGLI
GKFGGHAMAAGLTIAADALPRFQSAFEAVGQAWLDETALSRVIETDGDIGDECFVPPFVA
LLDAQVWGQGFPPPVFSGEFDVLSQAILKDKHLKLQLGRGRMRFNAIWFNHADTLPSRAR
FAYRLAADTFNGVSRVQMIVEHAQG
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacatcgtcacccgtcatgtcgacgacgcgacggccaacgccctcgcgcgcgac
ggcgtccacccggtgctcgcccgcctgttcgcgtcgcgcggcgtggccgagaccgccgag
accgaaacggcgctggcccggttgatccccccgacccagctcaagggcgcgcaagaggcc
gccgccttccttgccgacgccatcgccgccggcaagcgcatgctcgtggtggccgactac
gattgcgacggtgcgaccgcctgcgccgtggccgtgcgcggcttgcgcatgttcggggcg
aaggtcgagtacctggtgccgaaccgcttcgaatacggctatggcctgacgcccgaaatc
gtggcactggccgcgcaaggcaaggcgggaccgcccgacgtgttgatcaccgtcgacaac
ggcatcgccagcctcgacggcgtggccgccgcgcaggcgctcggcatcgaagtcgtggtg
accgatcaccatctgccgggcagcgaattacccaacgcgcgttgtatcgtcaatcccaac
cagccgggctgcgcattcccgagcaagaacctcgccggtgtcggtgtgatgttctacgtt
ctgctcgcgctgcgcgccgagttgcgcacgcgcggggcgttcgaggcgcgcgaacaaccc
cggctcgatacgttgctcgacctggtcgcgctgggcaccgtcgctgacgtggtcaagctc
gacgccaacaaccgcatcctcgtggcgcaagggctgtcgcgcatgcgcgccgggcgcatg
catccgggcatcaatgcgctttttcgcgcggccgcccgcaatgcgcgtcaggcgggcagt
ttcgatctgggcttcggcctagggccgcgtctgaacgccgccgggcgcctcgccgacatg
tcgctcggcatcgagtgtctgctgacggacgacgacgcccgcgcctggacgctcgcgcag
gaactcgacgcgatgaatcgcgagcgccgtgagatcgaggcagggatgcagcaggaagcc
ctggccgatctggcgcgcttcgaccctcgtgccgccacgacgctgtgcgcgttcaacgag
acctggcaccagggcgtgatcgggatcgtggccgcgcggctcaaagaaaagttctaccgt
ccgaccatcgtgttcgcccccggcgacgacggccagatcaaggggtccggccgctcgatt
ccgggttttcacttgcgcgacgcgctcgatctcgtcaccaagcgcgaaccgggtctcatc
ggcaagttcggtggtcacgcgatggccgcgggcctcacgatcgccgccgacgccctgccg
cgcttccagtcggcattcgaagccgtggggcaggcgtggctcgacgagacggcgctctcg
cgcgtgatcgagaccgacggcgacatcggcgacgagtgcttcgtgccgccctttgtcgcc
ctgctcgacgcacaggtgtggggacagggtttcccgccgcccgtgttctcgggcgagttc
gatgtgctctcgcaggccatcctcaaggacaagcacctgaagttgcaactcggtcgcggg
cgcatgcgcttcaacgccatctggttcaatcacgccgataccttgccgagccgggcgcga
tttgcctatcgcttggccgccgacaccttcaacggcgtctcgcgcgtacagatgatcgtc
gagcacgctcagggctga
DBGET
integrated database retrieval system
