Pantoea anthophila: OJ965_06545
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Entry
OJ965_06545 CDS
T08866
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pano
Pantoea anthophila
Brite
KEGG Orthology (KO) [BR:
pano00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pano03009
]
OJ965_06545 (rlmD)
Enzymes [BR:
pano01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
OJ965_06545 (rlmD)
Ribosome biogenesis [BR:
pano03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
OJ965_06545 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
PCMT
Methyltransf_25
MTS
RrnaAD
Ribosomal_L22
Cons_hypoth95
Methyltransf_23
Met_10
Methyltransf_4
PDGF
Motif
Other DBs
NCBI-ProteinID:
UZH03780
LinkDB
All DBs
Position
841454..842770
Genome browser
AA seq
438 aa
AA seq
DB search
MAQFYVAKQRVATQQRITVTIDELDPFGQGVARHKGKTIFVAGALPGEQAEITLTEDKRQ
FARGKVKRLLSRSPARVAPRCPHFDRCGGCQQQHAEVELQQQSKAQALSRMLSQAAAQTI
AVEEVIAGEPWGYRRRARLGLQWQNKAQRLQMGFRQEASNDLVDIQHCPVLVPELEALLV
PLHHCLSALRAVRRLGHVELVLADNGPLMILRHLDALHPDDREKLEQFSHKHQLMLFLDA
GDEGLTSLTTRTPFYHSHQLKLTFSPQDFIQVNDAVNQQMVAKAIAWLDLQPEDRVLDLF
CGMGNFTLPIGIFVQNVVGVEGVAALVRQAAYNADSNNLKNVSFFQHNLEETVSRQPWAA
QGFNKVLLDPARAGAAGVMAHVVKLAPERVVYVSCNPTTLARDSQVLLSAGYQLERVAML
DMFPHTRHLESMVLFRKT
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattttacgttgcaaaacagcgcgtggcgacacaacagcggatcaccgtcacc
atcgatgagctcgatccgttcgggcagggcgtggcgcgtcacaaaggcaaaacgattttt
gtcgccggtgccttgccgggtgagcaggcggagatcacgctgacagaggataaacgccag
tttgcccgggggaaagtgaaacggctgctcagccgcagtccggcacgtgtcgcaccgcgc
tgtccccactttgatcgctgcggtggctgccagcagcagcatgcagaggtggagctgcag
cagcagagcaaagctcaggcgctgagccggatgctgagccaggccgccgcgcagacgatc
gcggtggaggaggtgatcgccggtgaaccctggggctaccggcgtcgcgcccgtctgggt
ctgcagtggcagaataaagcgcagcggctgcagatggggttccgccaggaggcgagcaac
gatctggtcgatatccagcactgccccgttttagtgcccgaacttgaggcattgctggtg
ccgctgcaccactgcctgagtgcactgcgcgccgtcaggcgtctcggtcatgtggaactg
gtgctggcggataacggcccgctgatgatcctgcgccatcttgatgcgctgcatccggac
gaccgtgaaaaactggaacagttttcgcataagcatcagctgatgctcttcctggatgcg
ggtgatgaagggttaacgtcgttaaccacccggacacctttttatcactctcaccagctt
aagctaaccttcagtccacaggactttattcaggttaacgatgcggtgaatcagcagatg
gtggcaaaggcgatagcctggctcgatctgcaaccggaagaccgggttctggatctcttt
tgcggcatgggaaacttcacacttcctataggaatcttcgtacaaaatgtggttggtgtg
gagggggttgcagcattagtgcggcaggcagcgtataatgctgattcgaataatcttaaa
aacgtcagtttttttcagcataatctggaagagacggtgtcgcgccagccgtgggcggca
cagggatttaacaaggtattactcgatccggcacgcgccggggctgcgggcgtaatggca
catgtggttaaacttgcgccagaacgcgtggtctatgtgtcgtgtaatccaacaacactc
gcccgcgacagtcaggtcttgctgtcggcaggctaccaattggaaagggtcgcgatgctg
gatatgttccctcatacccgtcatctcgaatccatggtgctgttcagaaaaacataa
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