Pantoea anthophila: OJ965_11105
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Entry
OJ965_11105 CDS
T08866
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pano
Pantoea anthophila
Brite
KEGG Orthology (KO) [BR:
pano00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pano03032
]
OJ965_11105 (topA)
03400 DNA repair and recombination proteins [BR:
pano03400
]
OJ965_11105 (topA)
Enzymes [BR:
pano01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
OJ965_11105 (topA)
DNA replication proteins [BR:
pano03032
]
Prokaryotic type
DNA Topoisomerases
OJ965_11105 (topA)
DNA repair and recombination proteins [BR:
pano03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
OJ965_11105 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
DUF2399
DUF1877
Motif
Other DBs
NCBI-ProteinID:
UZH04624
LinkDB
All DBs
Position
1842572..1845169
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AA seq
865 aa
AA seq
DB search
MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSTAKKSADASTDKKVKKVK
KDEKAALVSRMGVDPYHGWEADYQILPGKEKVVAELKALAANADHIYLATDLDREGEAIA
WHLREVIGGDDSRFSRVVFNEITKNAIRQAFEKPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEEYWEVNAALTTPNGDELSMDVTH
RGDKVFRPVNRDETYAAVALLEKARFEIVDREDKPTSSKPGAPYITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGHITYMRTDSTNLSQDAVAMARGYIENNFGKKYLPDSPVTYASKEN
SQEAHEAIRPSDVEVVAEKLKDMEADAQKLYQLIWRQFVACQMTPAKYDSSTITAAAGEF
KLKAKGRILRFDGWTKVMPALRKNDEDRTLPAVSVGDSLDLQQLLPGQHFTKPPARFSEA
SLVRELEKRGIGRPSTYAAITSTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY
DFTARMEDSLDQVANNQAKWKAVLDHFFSDFTEQLEKAEKDPEEGGMQPNQMVLTSIDCP
TCSRPMGIRTASTGVFLGCSGYALPPKERCKQTINLIPENEVLNILEGDDAETNALRARR
RCQKCGTAMDSYLIDNERKLHVCGNNPECDGYEIEKGEFRIKGYDGPVVECEKCGSEMHL
KMGRFGKYMACTNEECKNTRKILRSGEVAPPKEDPVPLPELACEKSDAYFVLRDGAAGVF
LAANTFPKSRETRAPLVEELLRFKDRLPEKLKYLADAPVADPEGNKTLVRFSRKTKQQYV
SSEKEGKATGWSAFFIDGKWQEAKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagcactcgttattgttgagtccccggcaaaggccaaaacaatcaataaatat
ctgggcaatgactacgtggtgaaatccagcgtgggtcatatccgggatctgccgaccagt
ggttcaaccgcaaagaaaagtgctgacgcctcgacagataagaaagtcaaaaaagttaaa
aaagatgagaaagccgccctcgtcagccgcatgggtgttgacccctatcatggctgggaa
gcggattatcagatcctgcccggcaaagagaaggtggtggcagaactgaaggcgctggcc
gccaatgctgaccacatctatctcgcaaccgaccttgaccgcgaaggggaagccattgcc
tggcacctgcgggaagtgatcggaggcgatgactcacgcttcagccgcgtggtgttcaac
gaaattaccaaaaatgcgattcgtcaggcgtttgaaaagccgggcgaactcaatatcgac
cgggtcaatgctcagcaggcgcgccgctttatggaccgcgtggtgggctacatggtgtca
ccgctgctgtggaaaaagatcgcccgtggcctctcagccggtcgtgtgcagtcagtggcc
gttcgcctggtagtggaacgtgaacgtgaaattaaagcctttgttcccgaagagtactgg
gaagttaatgccgcgctgaccacgccaaacggcgatgagctgtcgatggatgtgacacac
cgaggcgacaaggtgttccgcccggtcaaccgtgacgaaacttacgccgcagtggcgctg
ctggaaaaagcgcgctttgaaattgtggatcgtgaagataagccgaccagcagtaagccg
ggtgcgccctatatcacctcgacgctacagcaggcggccagcacccgtctgggctttggc
gttaaaaagaccatgatgatggcgcagcgcctctatgaagcgggtcacatcacttacatg
cgtaccgattcgaccaacctgagtcaggatgcggtggccatggcgcggggctacatcgaa
aacaacttcggtaaaaaatatctgccagacagccccgtcacttacgccagcaaagagaac
tctcaggaagcgcacgaagcgattcgtccttccgatgtggaagtcgtggcggaaaaactg
aaggatatggaagcggatgcgcagaagctctatcagctgatctggcgtcagtttgtcgcc
tgccagatgaccccggccaaatatgattccagcaccatcacggccgccgccggtgagttt
aaactcaaagcgaaaggccgtattctgcgcttcgacggctggactaaagtgatgcctgcg
ctgcgtaagaacgatgaagatcgcacgctgcctgcggtcagtgtgggggatagcctcgac
ctgcaacagctgctgccgggtcagcacttcaccaagccaccggcacgcttcagcgaagcc
tcgctggtgcgtgagctggagaagcgcggtatcggccgtccgtcgacctacgccgccatt
acctcgaccattcaggaccgtggctatgtccgggtagaaaaccgccgtttctatgcggaa
aaaatgggtgaaatcgtcaccgatcgtctggaagagaacttccgcgagctgatgaactac
gatttcaccgcgcgcatggaggacagcctggaccaggtcgccaataaccaggcgaaatgg
aaagcggtgctggaccacttcttcagcgactttaccgagcagcttgaaaaagctgaaaaa
gatcctgaagagggcggcatgcagcccaatcagatggtgctgacctcgattgactgtccg
acctgtagtcgtccgatggggatccgcaccgccagtaccggtgtcttcctgggctgttcc
ggctatgcgctgcccccgaaagagcgctgcaagcagaccatcaacctgattccggaaaac
gaagttctgaacattctggaaggggacgatgccgaaaccaacgccctgcgtgcccgtcgt
cgctgccagaagtgcggcacagcgatggacagctacctgatcgacaatgaacgcaaactg
cacgtctgtggtaataacccggagtgtgatggttacgaaatcgagaaaggcgagttccgc
atcaagggttatgacggcccggtcgtggagtgcgagaagtgtggttcggagatgcatctg
aagatgggacgctttggcaagtacatggcgtgtaccaacgaagagtgcaaaaacacccgc
aaaattctgcgcagtggggaagtggcgccaccgaaagaagatccggtgccgctgcctgag
ctggcgtgtgagaagtcagatgcctatttcgtgttgcgcgacggggcggcgggcgtcttc
ctggcagccaatacgttcccgaaatcgcgcgaaacccgtgcgccgctggtggaagagctg
ctgcgcttcaaagatcgtctgcctgagaagctgaaatatctggcagacgcgccggtcgcc
gatccggaagggaataaaacgctggtgcggttcagccgcaagactaaacagcagtatgtc
tcctcagaaaaagagggtaaagccaccggctggtcagccttctttattgatggcaaatgg
caggaagcgaaaaagtaa
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