Pantoea anthophila: OJ965_11185
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Entry
OJ965_11185 CDS
T08866
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
pano
Pantoea anthophila
Brite
KEGG Orthology (KO) [BR:
pano00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pano03016
]
OJ965_11185
Enzymes [BR:
pano01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OJ965_11185
Transfer RNA biogenesis [BR:
pano03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
OJ965_11185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
PilZ
ODP
Motif
Other DBs
NCBI-ProteinID:
UZH04640
LinkDB
All DBs
Position
complement(1862216..1864150)
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AA seq
644 aa
AA seq
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MFQDNPLLAQLKEKLHSQTPRAEGVVKGTEKGFGFLEVDAQKSYFIPPPQMKKVMHGDRI
VAVIHTDKDRESAEPETLVEPFLSRFVGRVQKKDDRLSIVPDHPLLKEAIPCRPARDVSH
DFENGDWAVAEMRRHPLKGDRGFYAEITDFIVKADDHLAPWWVTLSRHNLEREAPDVSFG
EMMDENLTREDLTALNFVTIDSASTQDMDDALYVEAQADGSLSLTIAIADPTAYVAEGSQ
LDKLAAKRAFTNYLPGFNIPMLPRELSDDVCSLRPNVRRPALACRVTVAADGSLADDVTF
FAAWIESKAKLAYDDVSDWLENSGSWQPDSDAIAEQIRLLHRLCQARSEWRQTHALVFKD
RPDYRFLLGEKGEVLEIVAEPRRIANRIVEEAMILANICAAKVLRDRLGFGIYNVHAGFD
ATNAEQAAAVLANHGITVDAQAITTLEGFRVLRRELDAQPTPFLDSRIRRFQTFAEISTE
PGPHFGLGLEAYATWTSPIRKFGDMINHRLLKAIIRGETIARPDDAVTVTMSERRRLNRM
AERDVGDWLYARYLAPFAGTDRRFSAEIIDVSRGGMRVRLLEYGAVAFIPAPFIHAVRDE
MVCSQENGSVQIKGDVVYRVTDVIDVTIAEVRMETRSVVARPAV
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgttccaggataacccgctgctcgcgcagctgaaagagaagctccattcacagacacca
cgtgcagaaggcgtggtaaaaggcaccgaaaaaggcttcggctttctggaagtcgatgcg
cagaaaagttacttcattccgcctccgcagatgaagaaagtgatgcatggcgatcgtatc
gtcgccgtgatccacaccgataaagaccgcgaaagtgctgaaccggaaaccctggttgag
ccgttcctgagccgttttgtcggccgggtacagaagaaagacgatcgcctgtcgatcgtg
ccggaccatcccctgctgaaagaggctatcccgtgccgcccggcgcgcgatgtcagccat
gattttgagaatggcgactgggctgtcgctgaaatgcgtcgtcatcctctgaaaggcgac
cgcggtttttacgccgaaatcaccgattttatcgtcaaagcggatgaccatctggcgccg
tggtgggtgacgctgtcgcgtcacaaccttgagcgtgaagcgccggatgtcagctttggc
gagatgatggatgagaatctgacgcgcgaagatctgaccgcgctcaattttgtcaccatt
gacagcgccagcacccaggatatggatgatgcgctttatgtggaagcgcaggcggatggc
tcgctctccctgaccatcgctatcgccgacccgaccgcttatgtcgcggaaggcagtcag
ctggataagctggcagcgaagcgcgccttcaccaactacctgccgggctttaacatcccg
atgcttccgcgcgaactctctgatgatgtctgctcgctgcgtccgaatgtccgccgtccg
gcgctggcctgccgcgtcaccgtggccgccgatggcagcttggcggatgatgtcaccttc
tttgcggcctggatcgagtccaaagccaagctggcttatgacgacgtttctgactggctg
gaaaacagcggcagctggcagccggacagtgacgcgattgcagaacagattcgtctgctg
catcgtctctgccaggcgcgcagcgagtggcgtcagacccacgcgctggtgttcaaagat
cgtcctgactaccgcttcctgctgggagaaaaaggtgaagtgctggagatcgtcgcggaa
ccgcgtcgcatcgctaaccgcatcgttgaagaggcgatgatcctggcaaacatctgtgcg
gcgaaggtgctgcgtgaccgtctcggctttggtatttacaacgtccatgccggtttcgat
gccaccaatgctgaacaggccgcagcagtgctggcgaatcatggcatcaccgtggatgct
caggcgattactaccctggaaggcttccgcgtgctgcgtcgtgaactcgatgcccagccg
acgccgttcctcgacagccgcatccgtcgcttccagacctttgccgagatcagcaccgag
ccgggcccgcacttcgggctgggactggaggcgtacgccacctggacctcacccatccgt
aagtttggcgacatgatcaaccatcgcctgctgaaagcgatcatccgtggcgagacgatc
gcccgtccggacgatgccgtgacggtcacgatgagcgagcgccgtcgtctgaaccgcatg
gccgaacgtgatgtgggtgactggctctacgcccgttatcttgcgccgtttgcaggcacc
gatcgtcgcttcagcgccgagatcatcgacgtgtcacgcggcggtatgcgcgttcgtctg
ctggagtatggcgcggtggcctttatccctgctccgttcattcacgcggtgcgtgatgag
atggtctgtagccaggaaaatggcagcgttcagattaaaggcgacgtggtttatcgtgtg
actgacgtgattgatgtcaccatcgccgaagtccgcatggaaacccgcagcgtcgtggcg
cgtcccgccgtctga
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