Pantoea anthophila: OJ965_11405
Help
Entry
OJ965_11405 CDS
T08866
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pano
Pantoea anthophila
Brite
KEGG Orthology (KO) [BR:
pano00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pano03019
]
OJ965_11405 (hrpA)
Enzymes [BR:
pano01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OJ965_11405 (hrpA)
Messenger RNA biogenesis [BR:
pano03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
OJ965_11405 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
PhoH
T2SSE
AAA_23
NACHT
nSTAND3
HA2_N
ResIII
AAA_30
DUF7217
TsaE
Motif
Other DBs
NCBI-ProteinID:
UZH04679
LinkDB
All DBs
Position
1906448..1910350
Genome browser
AA seq
1300 aa
AA seq
DB search
MSSPDTSPLTALRARLDGLMLRDRQRLQRRLQGARKVKSPEAQQGIARELEQDVFAAEQR
VAQRRAATPAITFPDNLPVSQKQQDIAEAIRDYQVVIVAGETGSGKTTQLPKICLALGRG
VTGLIGHTQPRRLAARTVANRIADELNTSPGGCVGYKVRFNDQVSELTQVKLMTDGILLA
EIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLRELLPRRPDLKVIITSATIDPQRFSRH
FNDAPVIEVSGRTFPVEVRYRPVVEEAEDGDRDQLQAIFDAVDELGQESRGDILIFMSGE
REIRDTADALNKRDLPHTEVLPLYARLSNAEQNRVFQSHSGRRIVLATNVAETSLTVPGI
KYVIDPGTARISRYSFRTKVQRLPIEPISQASANQRKGRCGRVSDGICIRLYSEEDFLSR
PAFTDPEILRTNLASVILQMTSLGLGDIAAFPFVEAPDKRNIQDGIRLLEELGALTLNEE
TGHYTLTGSGRQLAQLPVDPRLARMVLEAQRLGCVREVMIITAGLSIQDPRERPAEKKQA
SDEKHRRFADKDSDFLAYVNLWNYLAEQQKALSGNLFRRQCKSDFLNYLRVREWQDIYTQ
LRQVVRELGIPVNSEPAPLQQVHCTLLSGLLSHIGQKDADKQEYTGARNTRFAIFPGSGL
FKKPPKWTMVAELVETSRLWGRTAGRIEPEWIEPLAQHLTKRSYSEPHWEKSQGAVMATE
KVTLYGLPIVAARKVNYGSIDPTLSRELFIRHALVEGDWQTRHAFFRANQKLRSEVEDLE
HKSRRRDILVDDETLFAFYDQRIGKEVVSARHFDSWWKRASRDNADLLNFDRQMLIKEGA
DKVSQLDYPNFWHQGNLKLKLSYQFEPGADADGVTVHIPLPLLNQVEDSGFEWQIPGVRR
ELIIALIKSLPKPLRRHLVPAPNYAEAFLGRVTAMEMPLADALAREFRRMTGVTLERENW
QWEQVPDHLKMTFRVVDEHNRKLLEGKDLTALKARLKDKVQETLSKVADDGLEQSGLHLW
SFGELPRSYEQKRGSYQVKAWPALVDEKESVAIRLFDSEQEQQKMMWRGQRRLLLLNVPS
PVKYLHEKLPNKAKLGLYFNPYGKVLELIDDCIACGIDKLMGEAGGPAWDQASFEQLRDK
VRGELNETVVTIAKQVEQILTAVFNINKRLKGRVDMTMALALSDIKAQLNGLVYRGFVTG
NGWQRLADTLRYLQGIERRLEKLPADPHSDRARMLKVQAVEQAYQAWRNKLPPQRQDDEE
VLSIRWMIEELRISYFAQQLGTPYPISDKRILQMMEQIAG
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgtcatctcccgatacgtctccactgaccgcgctccgggcccggctcgacggcttaatg
cttcgcgatcgccagcggctgcagcgccgtctgcagggggcgagaaaagtcaaaagcccc
gaggcacaacagggcatagcccgcgagctggagcaggacgttttcgccgctgaacagcgt
gtcgcccagcggcgcgcggcgacgccagccatcaccttcccggacaatctgcctgtcagc
cagaaacagcaggatatcgctgaggcgattcgcgattaccaggtcgtgattgtggccggg
gaaaccggctccggtaaaaccacgcagctgccgaaaatctgtctggcgctggggcgtggc
gtgaccggattgattggtcacacccagccccgtcgcctggcggcacgcaccgtggccaat
cgcatcgccgatgagctgaacacctcgcccggcggctgtgtcggctataaagtgcgcttt
aatgaccaggtcagcgagctgacccaggtcaagctgatgaccgatgggatcctgctggcg
gagatccagcaggatcgcctgctgatgcaatatgacaccatcatcatcgacgaagcgcac
gagcgcagcctgaatatcgacttcctgctcggttatctgcgtgagctgctgccgcggcgt
cccgatctcaaggtgatcatcacctctgcgaccatcgacccgcagcgtttctcgcggcat
ttcaacgatgcgccggttatcgaagtctccggccgcaccttcccggtggaagtgcgctac
cggccggtggttgaagaggcggaggatggcgaccgcgaccagctgcaggcgatctttgat
gccgtcgatgaactcggacaggagagccggggcgatattctgatcttcatgagcggcgag
cgcgaaatccgcgataccgccgacgcgctgaataaacgcgacctgccgcacactgaagtg
ctgccgctgtatgcacgactgtcgaacgccgaacagaaccgggtgtttcagtcgcacagc
ggccgccgcatcgtgctggccaccaacgtggcggaaacctcgctgacggtgcccggcatc
aaatatgtgattgaccccggcaccgcgcgtatcagccgctacagcttccgcaccaaagtg
cagcgtctgccgattgagccgatttctcaggcctcggccaatcagcgtaaaggacgatgc
ggacgtgtttccgacggtatctgtatccgcctctactcggaagaggatttcctgagtcgt
ccggcctttactgaccccgaaattctgcgcaccaacctggcgtcggtgatcctgcagatg
acctcgctggggctgggcgatatcgcggcgttcccctttgtggaagcgcccgataagcgc
aatattcaggatggtatccgcctgctggaagagctgggtgcgctgacgctgaatgaagag
acgggtcactacacgctcaccggctccgggcgacagctggcgcagttgccggtcgatccg
cgcctggcgcgaatggtgctggaggcgcagcggctgggctgtgtgcgcgaagtgatgatc
atcactgcgggcctgtcgattcaggacccgcgcgagcgtccggcagagaagaagcaggcc
tctgatgaaaaacaccggcgctttgctgacaaagattccgacttcctggcctatgtcaat
ctgtggaactatctggcggagcagcagaaagccctgtccggcaacctgttccgacgccag
tgcaaaagcgactttctcaactatctgcgcgtgcgggagtggcaggatatctatactcag
ctgcggcaggtggtgcgcgaactgggtattccggtcaacagcgaaccggctccgttacag
caggttcactgtacgctgttgagcggtctgctgtcgcacatcgggcagaaagatgccgac
aagcaggagtacaccggcgcgcgcaatacccgcttcgccatcttccccggctccggactg
tttaagaagccgccgaagtggaccatggtggcagagctggtcgaaaccagccgcctctgg
gggcggacggcgggacgcattgagccggagtggattgaaccgctggcgcagcatctgacg
aagcgcagctacagcgaaccgcactgggagaaatcgcagggggcggtgatggcaaccgag
aaggtcacgctctatggcctgccgattgttgccgcgcgcaaggtcaactacggcagcatc
gatcccaccctgagccgcgaactctttatccgtcacgccctggttgagggcgactggcag
acgcgtcacgctttcttccgcgccaaccagaaactgcgcagcgaagtggaagatctggag
cataaatcccgtcgccgcgacattctggtcgatgacgaaacgctgtttgctttttatgac
cagcgcatcggcaaagaggtggtctcggccaggcattttgacagctggtggaaacgggcc
agccgcgataacgccgatctgctcaacttcgacaggcagatgctgatcaaagagggcgcg
gacaaggtcagtcagctcgactatcccaacttctggcatcagggcaacctgaaactgaag
ctgagttaccagttcgagccaggcgcagatgccgatggtgtgacggtccatattccgctg
ccgttgctgaatcaggttgaggatagcggctttgaatggcagatccccggcgtgcgccgt
gagttgattattgcgctgattaagtcgctgccgaaacccctgcgccgccatctggtacct
gctcctaactacgccgaggcgtttctgggaagggtgacggcgatggagatgccgctggca
gatgcgctggcgcgcgagtttcgccgcatgaccggcgttacgctggagcgggagaactgg
cagtgggaacaggtgcccgatcatctgaaaatgaccttccgggtagtcgacgagcacaat
cgtaaactgctggaaggcaaggacctcaccgcgctcaaggcccggctgaaggacaaggtg
caggagacgctgtcgaaagtggccgatgacgggctggaacagagcgggctgcatctctgg
agctttggcgaactgcctcgcagctatgaacagaagcgcggcagttaccaggtgaaagcc
tggcctgcgctggtagatgaaaaagagagcgttgctatccgcctgtttgacagcgaacag
gagcagcaaaaaatgatgtggcgcggccagcgtcgtctgctgctgctgaatgtgccgtcg
ccggtgaagtatctgcacgagaagttaccgaacaaggccaaactcggactctactttaac
ccctatggcaaagtgctggagctgatcgacgactgcatcgcctgcggcatcgataaactg
atgggggaagcgggcggccctgcctgggatcaggcctcgtttgagcagctgcgtgacaaa
gtccgcggtgagcttaatgagaccgtggtgacgatagctaagcaggtagagcagattctg
acggcggtctttaacatcaataaacggctgaaaggccgggtggatatgaccatggcgctg
gcgctgtccgatatcaaagcgcagttaaacgggctggtctatcggggctttgtcaccggc
aacggctggcagcgactggccgacacgctgcgttatctgcagggcattgagcggcgactg
gagaaactgcctgccgatccgcacagcgatcgggcacggatgctgaaagttcaggcggtg
gaacaggcgtaccaggcgtggcgcaacaagctgccgccgcagcgtcaggatgatgaagag
gtgctcagcattcgctggatgattgaagagctgcgcatcagctactttgctcagcagctg
ggtacgccttatccgatctcggataagcgtattctgcagatgatggagcagatagcgggc
tga
DBGET
integrated database retrieval system
