Pantoea anthophila: OJ965_13795
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Entry
OJ965_13795 CDS
T08866
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pano
Pantoea anthophila
Pathway
pano03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pano00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OJ965_13795 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pano03400
]
OJ965_13795 (mfd)
Enzymes [BR:
pano01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OJ965_13795 (mfd)
DNA repair and recombination proteins [BR:
pano03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OJ965_13795 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UZH01783
LinkDB
All DBs
Position
2435701..2439144
Genome browser
AA seq
1147 aa
AA seq
DB search
MPEQTRYTLPVKSGDHRQLGQLIGAAHAVECASITERHAGPVLMITPDTQTALRLLDEIR
QFTDLPVAHLADWETLPYDSFSPHQDIISSRLSTLYQLPVMQRGLLIMPVNTLMQRVCPH
SFLHGHALVMKQGQKLSRDRLRDQLEQAGYRHVDQVMEHGEYATRGALLDLFPMGSDQPY
RIDFFDDEIDSLRLFDVDSQRTLEAVPEINLLPAHEFPSDKAAIELFRSRWREIFDVRRE
SEHIYQQVSKGTLPAGIEYWQPLFFEQPLPSLFSYLPDNTLIVNCGDLEGSATRFWQDAE
ARYENRRVDPMRPLLEPATLWLRPDGLMGELKAWPRISMTNEVLPAKAANTNLGYTPLPD
VAVQAQAKAPLDPLRQFIDTFSGAVVFSVESEGRRESLQELLARIKLRPQPVHRFDVTGE
DRFSLMIGASERGFIDTVGNRALICESDLLGERVSRRRQDTRRTINPDILIRNLAELHPG
QPVVHLEHGVGRYIGLTTLEAGGIQAEYLMLSYANDAKLYVPVSSLHLISRYAGGADENA
PLHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAKTGFAFKHDREQYQLFCESFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAIENHKQVAVLVPTTL
LAQQHYDNFRDRFANWPVRIEMLSRFRTAKEQAQVLEQASEGKIDILIGTHKLLMSDLKW
HDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDDLVIREAILREILRGGQVYYLYNDVENIEKAAQRLSELVPEARVAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
DEQSGQMETLGFTLYMELLENAVDALKAGREPSLEDLTSNQTEVELRMPALLPETFIPDV
STRLSLYKRIASAEAEEELQELKVEMIDRFGLLPDPARNLLDVAIIRLKARAVGLRKIEA
SDKGGYFDFAPQNKVDPAWLISLLQKEPQQWKLDGPTRLRFTRELTERKIRMDWVQSFVS
QLAEHQA
NT seq
3444 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaacagactcgttataccctgcccgttaaatccggcgatcaccggcagcttggt
cagcttatcggcgctgcgcacgcggtagagtgtgccagcattaccgagcgacatgccggt
ccggtgttgatgattacgcccgatacccaaaccgccctgcgtctgctggatgaaatccgc
cagtttaccgatctgccagtggcccatctcgctgactgggaaacgctgccctacgacagc
ttttcaccgcatcaggatattatctcctcccgcctgtcgaccctttaccagctgccggtg
atgcagcgcgggttgctgattatgccggtcaacacgctgatgcagcgcgtctgcccgcac
agcttcctgcacggtcacgcgctggtgatgaaacagggacaaaaactgtcgcgcgacagg
ctgcgcgaccagcttgagcaggcgggttatcgccatgtcgaccaggtgatggagcacggt
gaatacgcgacgcgcggcgccctgctcgacctgtttccgatgggcagcgatcagccctac
cgcatcgacttcttcgatgatgagattgacagcctgcgtctgttcgacgttgacagtcag
cgtacgctggaagcggtgccggaaatcaatctgctgcccgcgcatgaatttcccagcgac
aaggcagccattgagctgttccgcagccgctggcgcgagatcttcgacgtgcgccgcgag
tcggagcatatctatcagcaggtcagcaaaggcacgctcccggcgggcatcgaatactgg
cagccgctgttttttgagcagcccctgcccagcctgttcagctatctgcctgacaacacc
ctgattgtgaactgcggcgatctggaaggcagtgccacccgcttctggcaggatgcggag
gcgcgttacgagaatcgtcgcgtcgatccgatgcgtccgctgctggagccagccaccctg
tggctgcgtccggacggtctgatgggcgagctgaaagcctggccgcgcatctccatgacc
aatgaggtgctgccggcaaaagccgccaacaccaatctcggttataccccgctgccggat
gtggcggttcaggcccaggcaaaagcgccccttgacccgctgcgtcagtttatcgacacc
ttcagtggtgccgtggtgttctcggttgaaagtgagggccgccgggaaagcctgcaggag
ctgctggcacgcatcaaactgcgtcctcagccggtgcatcgcttcgatgtgaccggtgag
gatcgtttcagcctgatgatcggggccagcgaacggggttttatcgacaccgtggggaac
cgggcgctgatttgcgaaagcgatctgctgggcgaacgcgtcagccgccgccgtcaggat
acccgccgcaccattaacccggacattcttatccgtaacctggcggagctgcatcccggt
cagccggtggtgcatctggagcacggcgtgggccgctatatcggcctgaccacgctggaa
gcgggtggcatccaggcggaatacctgatgctctcctacgcgaacgacgccaaactttac
gtgccggtctcctcgctgcatctgattagccgctatgccggtggggctgacgaaaacgcg
ccgctgcacaaactgggcagcgatgcctggtctcgcgcacggcagaaagccgccgaaaaa
gtgcgcgacgtggcggcggagctgctggacatttatgcgcagcgcgctgccaaaaccggt
tttgcctttaagcatgaccgcgaacagtatcagctgttctgcgagagcttcccgtttgag
accacccccgatcaggctcaggccatcaatgcggtgctgagcgatatgtgtcagccgctg
gcgatggaccgcctcgtgtgtggtgatgtgggcttcggtaaaacggaagtggccatgcgc
gccgcgtttctggctattgagaaccacaagcaggttgccgtgctggtgccgactaccctg
ctggcgcagcagcactacgataacttccgcgatcgcttcgccaactggccggtacgcatt
gagatgctgtcccgtttccgcaccgcgaaagagcaggcgcaggtgctggaacaggccagc
gaaggcaagatcgacatcctgatcggcacgcataagctgctgatgagcgatctgaaatgg
cacgatctgggtctgctgattgtcgatgaggagcaccgtttcggggtgcgtcataaagag
cgcatcaaggcgatgcgggccgacgtggatatcctgaccctgaccgccacgcctattccg
cgtaccctgaatatggcgatgagcggcatgcgcgatctctccattatcgccacgccgcct
gcccgccgcttagcggtgaaaacctttgtgcgcgaatatgatgatctggtgatccgcgaa
gcgattctgcgtgagattctgcgtggcggccaggtctactacctctacaacgatgtcgaa
aatattgagaaagcggcacagcgtctcagcgaactggtgccggaggcgcgggtagcgatc
ggccacgggcagatgcgtgagcgtgagctggaacgggtgatgaacgatttccatcatcag
cgtttcaacgtgctggtctgcaccactatcatcgaaaccgggatcgatattccgaccgct
aacaccatcatcatcgagcgggccgaccactttggcctggcgcagctgcatcagttgcgc
ggtcgcgtcgggcgttcgcaccatcaggcttatgcctggctgttaacgccacatccgaag
gcgatgaccaccgacgcgcataagcgactggaggcgatcgcctcgctcgaagatctgggg
gccggttttgcgctggcaacgcacgatctggagattcgcggcgccggtgaactgctgggt
gatgagcagagcggtcagatggagacgctgggcttcacgctctatatggagctgctggag
aacgccgtcgatgcgctgaaagcggggcgtgaaccttcactggaggatctcaccagcaat
cagaccgaggtagaactgcggatgcccgcgctgctgccggagacctttataccggatgtc
agcacccgtctgtcgctctataagcgcatcgccagcgcggaagcggaagaggagctgcag
gagctgaaagtggagatgatcgaccgctttggcctgctgcccgatccggcgcgcaatctg
ctggatgtcgccatcatccggctgaaggcccgcgcggtggggctgcgcaagattgaagcc
agcgataaaggcggctatttcgattttgcgccgcagaacaaggtggatccggcctggctg
atcagcctgctgcagaaagagcctcagcagtggaagctggatggcccgacacggctccgg
tttacgcgtgagctgacggaaagaaagattcgtatggattgggtgcagagcttcgtttca
caactggctgagcatcaagcgtaa
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integrated database retrieval system
