Pantoea anthophila: OJ965_13935
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Entry
OJ965_13935 CDS
T08866
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pano
Pantoea anthophila
Pathway
pano03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pano00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OJ965_13935 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pano03019
]
OJ965_13935 (rne)
03009 Ribosome biogenesis [BR:
pano03009
]
OJ965_13935 (rne)
Enzymes [BR:
pano01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
OJ965_13935 (rne)
Messenger RNA biogenesis [BR:
pano03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OJ965_13935 (rne)
Ribosome biogenesis [BR:
pano03009
]
Prokaryotic type
rRNA processing factors
OJ965_13935 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
UZH01809
LinkDB
All DBs
Position
2464377..2467817
Genome browser
AA seq
1146 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEISREYFPSSYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALSALELPEGMGLIVRTAGVGKSAESL
QWDLSFRLKHWDAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDYIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTIRDNESLA
LSILRLIEEEALKDNTKEVHAIVPVQVASYLLNEKREAVNAIEKRQGGVRAIIVPDDKMQ
TPHYSVLRVRKGEETQTLSYHLPKLHEAEMAMPSDEEHSERRRPEQPALAAFVMPDAPPA
PVEVAPEAKRTESKPAAKGAPAVAPSATVSTGFFGRLLGGLKKMFAGEEAPAAKPEAAAV
AEPQKAAESEQEQSSSRGGERRNNNNRRNNNRRERTPRNGDNAQSREGREPRESREPREP
RESREPRESREPRDGNDNRRNKRQSQSGEAREERPALSEEARQQREEQQQQRREQRAERQ
RRRQEEKRAGEEAAKAAEQSAVADASEATDAQEEERVQVMPRRKPRQLNQKVRVDDNRQP
VAADASDNAQPAEVRQPQPADVAQPQPELQSPQTDDQDDNENRDGANMPRRSRRSPRHLR
VSGQRRRRYRDERYPTQSAMPLAAAAASPEMASGKVWVRYPVSQASEEQVQNVTHETPAY
SPEESAEATALPVAAAAAAESAVQADVSAEQAAPQADAPVQQADAAVQQAEPLAETPVPV
VNTDDTRAIEAPVDQQPSVVPAADEAKAEVVAAEAVPAEPVTETPVANSADAAQPADVAE
HAAVDVSEAIAAEVEEVLKAPVAADADTAPVQEPHAPVAARDVAPAAPVTAAEPAAAAPA
ADAVANDGTRWKHFASAPMTKAPAPAWQSEPAPHSDWVRSPYQFDGRGSAGGHSATHQAT
APATKP
NT seq
3441 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaataaacgcaactcagcaggaagagttgcgcgttgccctggttgac
ggtcagcgtctgtacgacctggatatcgaaagccccggacacgaacagaaaaaagccaac
atctacaaaggtaaaatcactcgcattgaacccagccttgaagctgcgtttgtcgactac
ggcgcagagcgtcacggtttcctcccgttaaaagaaatttcccgcgaatacttcccctcc
agctacaacgcgcatggccgtcccaacattaaagatgtgctgcgtgaaggtcaggaagtt
attgttcagatcgataaagaagagcgcggcaacaaaggcgcggcgctgaccacctttatc
tcgctggcgggcagttatctggtgctgatgccgaacaacccgcgtgcaggcggtatctcc
cgccgcattgaaggtgacgaccgtaccgagctgaaagaagccctgtctgcgctggaactg
ccggaaggtatgggcctgatcgtccgtaccgcaggcgtcggcaaatctgccgaatcgctg
cagtgggatttaagtttccgtcttaagcactgggatgcgatcaaaaaagccgcagagagc
cgtccggcgcccttcctgatccatcaggaaagtaacgtgattgtgcgtgccttccgcgac
tatctgcgtcaggacatcggtgaaattcttatcgataacccgaaagttctggagctggcg
cgtcagcacatcgctgcgctgggtcgtccggacttcagcagcaaaatcaagctctacacc
ggtgaaattccgctgttcagccactatcagatcgaatcgcaaatcgaatccgcgttccag
cgcgaggttcgcctgccgtccggtggctccatcgtcatcgacagcacggaagcactgacc
gctatcgatatcaactcagcccgtgcgacacgcggcggtgacatcgaagagacggcgttt
aacaccaacctggaagcggccgatgagattgcccgtcagctgcgtctgcgcgacctgggc
gggctgatcgttatcgattacatcgatatgactccggttcgccatcagcgcgccgtcgag
aatcggctgcgtgaagcggtccgtcaggatcgtgcccgtattcagatcagccacatttca
cgtttcggcctgctggagatgtcacgtcagcgtctgagcccgtcactgggtgagtccagc
caccacgtctgcccgcgctgtagcggcaccggcaccattcgtgataacgagtcgctggcc
ctgtcgattctgcgtctgattgaagaagaagcgctgaaagacaacaccaaagaagtgcac
gcgattgttccggttcaggtggcctcttacctgctgaacgaaaaacgtgaagcggtcaac
gcgattgaaaaacgccagggtggtgtgcgggcgatcatcgttcctgatgacaagatgcag
accccacactactccgtgctgcgcgtgcgtaaaggtgaagagacgcagaccctgagttat
cacctgccgaagctgcatgaagctgagatggcaatgccgtcggatgaggagcactctgag
cgtcgtcgtcctgagcagccagctctggccgcctttgtgatgcctgatgcgccgccggcc
ccggttgaagtcgcccctgaagcgaagcgcaccgaaagcaaacccgcagcaaaaggcgcg
ccggcggtggcaccgtcagcgaccgtcagcaccggtttcttcggacgcctgctgggtggc
ctgaaaaaaatgttcgcgggcgaagaagcccctgctgctaagcctgaggccgctgccgtt
gctgaaccgcagaaagccgcagaaagtgagcaggagcagagttcctcccgtggcggcgag
cgtcgcaacaataacaaccgtcgcaacaacaatcgtcgtgaacgcacgccgcgtaacggt
gacaatgcacagtcacgcgaaggccgtgaaccgcgtgaaagtcgcgagccacgtgaaccg
cgtgagagccgtgagccacgcgaaagccgcgagccgcgtgatggcaacgataatcgccgc
aacaagcgtcagtctcagtctggcgaggctcgcgaagagcgtccggcactgagcgaagaa
gcgcgtcagcagcgtgaagagcagcagcagcagcgccgtgaacagcgtgctgaacgtcag
cgtcgtcgtcaggaagagaagcgcgcgggtgaagaagccgccaaagccgctgagcagtca
gccgtggcagatgcgtcggaagcgactgacgcacaggaagaggaacgcgttcaggttatg
ccgcgtcgtaagccgcgccagctgaaccagaaggtccgcgttgacgacaaccgtcagcct
gtggcagcggatgccagcgacaatgcgcagcctgccgaagtgcgtcagcctcagccggcc
gacgttgctcagccgcagcccgaactgcagagccctcagactgacgatcaggatgacaac
gagaaccgcgacggtgcgaatatgccgcgtcgctcacgtcgttcaccgcgtcatctgcgc
gtcagcggacaacgtcgtcgtcgttaccgtgatgagcgttatccgacgcagtcagcaatg
cctctggctgcggcagcagcctcgcctgagatggcgtccggtaaagtctgggttcgctac
ccggtaagccaggccagcgaagagcaggttcagaatgtgacgcatgagacaccggcgtac
agccctgaagagagcgcagaagccactgcgctgccggtcgcggctgcggctgcggctgaa
tccgcagtacaggcagacgtctctgcagagcaggctgcgccgcaagctgatgcgccagtt
cagcaggctgacgccgcagtacagcaggccgagccactggcagaaacacccgtgccggtg
gtgaacactgacgacacccgtgctattgaagcaccggttgatcagcagccttctgtggtt
cctgctgcagacgaagcaaaagcagaagtggtcgcggctgaagccgttcctgctgaaccg
gtcaccgaaaccccggttgcaaactctgcggatgccgcacagccagctgacgttgctgag
cacgctgccgttgatgtcagcgaagcgattgccgccgaggttgaagaggttctgaaggct
ccggtcgcagccgatgctgacaccgcgccggttcaggaacctcacgcaccggttgccgcg
cgcgatgttgcgcctgcagctcccgtgaccgcagccgagccggcagcagccgcgcctgct
gctgatgcggtagccaatgacggaacgcgctggaagcacttcgcctctgcgccaatgact
aaagccccggcgccagcctggcagtcagaaccggctccgcacagtgactgggtacgctca
ccgtatcagttcgacggtcgcggttcagcaggcggtcacagcgccacgcatcaggcaaca
gccccggcaaccaagccgtaa
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