Pantoea anthophila: OJ965_16650
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Entry
OJ965_16650 CDS
T08866
Name
(GenBank) AAA family ATPase
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pano
Pantoea anthophila
Brite
KEGG Orthology (KO) [BR:
pano00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pano03400
]
OJ965_16650
DNA repair and recombination proteins [BR:
pano03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
OJ965_16650
Archaeal homologous recombinant proteins
OJ965_16650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
AAA_29
SMC_N
AAA_21
ABC_tran
nSTAND3
MobB
cobW
Motif
Other DBs
NCBI-ProteinID:
UZH02314
LinkDB
All DBs
Position
3014851..3018525
Genome browser
AA seq
1224 aa
AA seq
DB search
MKILTLRFKNLNALRGEWFIDFRAEPFASNGLFAITGATGAGKTTLLDAICLALYHQTPR
LGAISQSQNPLMTRDCAECLAEVEFEIKGEAWRAFWSQNRARGAADGKLQAPRVELARCA
DNTIVADKVGDKLKLTETLSGLDFERFTRSMMLSQGQFAAFLNARASERAELLEELTGTE
IYGLISAAIYERHKEAKTQLDLLRSQAGAMTLLESEAREALQQQLTGLTQAEEQLSSHYQ
QAQQQQQWQQQAQQLQRESEQAEAAVQQASAALQAAEPDRQRLARSEPAEKLRGALQQRD
ALRTEQQQVSHRCQQLTDQQQQAQSQHQQHQQRYAATQLARQQAQQEQQQQETLLTEQVL
PLDQRISALQQHNEEQQQENARQQQHLDQTQATLAEQTRQVTRLKQAMAEQHQLRAELTD
LAHWGASLPLWQENFALLAQREATLAGLTQQRNQQQQQIATQQAEQQQQARQALPRQQAE
QQARQALSQAEQALTSLQEQHPPAALRQALSQLQSSRPARQQLLLLSTQWQPLHQQLDQR
QQRLHALEKAHQQSEAELQTLRETWKREKQQLDDVEKICALEQQIVDLSDYRARLTADQP
CPLCGSCTHPAVGAYSTLEVSANQQRRAALQQKTEALREAGTAKNEQLKQSAVQQQTLRE
EIAGMQQQLEQLEQQWQILSGELALTFPLADREALATWQQQQSDRESQLEQQRQAQEAAS
QALQAAKDHHLQQLQAWQQQQQAEQLAQQSLTSLLQALDVLQQRQQQEQQAWEQLQSRLE
QQFSAHHLALPAAADRAAWLAEQQRRWQRWQESEQLLANLQPQLLKGETQLTALQQQAEQ
EQQQLTTRQQQQQQSQAQLSEMRQQRLALFGDREVTLARQQLQARVQHADEQLAQQLTAL
QQAQAEVSRLQGELAGLENQRQTLSSKLAEAESTLQQSLARAGFADEASLRAALLDEQSA
LQLRQQLQQLDQQYQQQQARRADLRQRLSAHQQAKPDAMPESAEALAQQLEQLRLALRDN
ASQQGQIQQQLHSDASLRARQQSLMTQIEQDGVALAQWSLLNDLIGSASGDKFRRFAQGL
TLDHLVALANRQLDRLHGRYLLQRRAQDQLELDVVDTWQADAARDTRTLSGGESFLVSLA
LALALSDLVSHKTRIESLFLDEGFGTLDAQTLDTALDALDALNASGKTIGVISHVEAMKE
RIPVQIKVRKMNGLGYSQLELPQG
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgaagatccttacgctacgttttaaaaatctgaatgccctgcgcggtgaatggtttatc
gatttccgcgccgaaccttttgccagcaacggcctgttcgccattaccggtgccaccggt
gccgggaaaaccaccctgctggatgccatctgcctggcgctctaccaccagacgccgcgc
ctgggcgcgatctcccagagccagaacccgctgatgacccgcgactgcgcggaatgtctg
gctgaggtggagtttgagattaagggtgaagcctggcgcgccttctggagtcagaaccgc
gcgcgcggtgccgccgacggcaagctgcaggccccgcgcgttgagctggcacgctgcgcc
gacaacaccatcgtggccgataaggtgggtgacaagctgaagctgacggaaaccctctcc
gggctcgattttgaacgctttacccgctcgatgatgctctctcagggccagttcgccgcg
tttctcaatgccagagccagtgaacgcgccgaacttctcgaagagctgaccggcaccgaa
atctacggcctgatctcagccgccatttatgagcgccacaaagaggcgaaaacccagctg
gacctgctgcgcagccaggcgggcgcgatgaccctgctggagagcgaggcgcgcgaggcg
ctgcaacagcagctgaccgggctgacccaggcggaagagcagctcagcagccactatcag
caggcgcagcagcaacagcagtggcagcaacaggcgcagcagctgcagcgggagagtgag
caggccgaggcggcggtgcagcaggccagcgcggccttacaggccgctgagccagatcgc
cagcggctggcacgcagtgaaccggctgaaaaactgcggggcgcgctgcagcagcgcgac
gccctgcgtaccgagcagcagcaggtctcgcatcgctgtcagcagctgacggatcagcag
cagcaggcgcagagccagcatcagcagcatcagcagcgctatgcggccacccagcttgcc
cgccagcaggcacagcaggaacagcagcagcaggagaccctgctgacggaacaggtgttg
ccgctggatcagcgcatcagcgccctgcagcagcacaatgaggagcagcagcaggaaaac
gcccgtcagcaacagcatcttgatcagactcaggctaccctggcggagcagacccgtcag
gtgacccgcctgaagcaggcgatggctgaacagcatcagttacgtgcggagttgaccgat
ctggcgcactggggggcttcgctgccgctgtggcaggagaattttgccctgctggcacag
cgtgaggcgacgctggcgggactgacgcaacagcgcaatcagcagcagcagcagatcgcc
acccagcaggcggaacagcagcagcaggcccgacaggcactgccgcgccagcaggcggag
caacaggcccgccaggcgctgtcgcaggcggagcaagcactaacttcgcttcaggagcag
catccgcctgccgcactgcgtcaggcgttaagccagttgcagagcagccgtccggcgcgt
cagcaactgctgctgctctcaacgcagtggcagccgctgcaccagcagctggaccagcgc
cagcaaaggctacacgcgctggaaaaagcgcatcagcagagtgaagcggaattgcagacg
ctgcgtgagacgtggaaacgcgaaaaacagcagctggacgatgtggaaaaaatctgcgcg
ctggagcagcagattgtcgatctcagcgactaccgcgcccggctcaccgccgatcagccc
tgcccgctgtgcggctcctgcacccatcccgccgtcggagcctacagcacactggaagtc
agtgctaaccagcagcgccgggctgcgctgcaacaaaaaaccgaggcactgcgcgaagcg
ggcacggcaaaaaacgaacagctgaagcagtctgcggtacagcagcagacgctgcgcgag
gaaatcgccgggatgcagcaacagcttgagcagcttgagcagcaatggcagattctgagc
ggtgagctggcacttactttcccgcttgccgatcgcgaggccttagccacgtggcagcag
cagcaaagcgaccgtgaaagtcagcttgagcagcagcgacaggctcaggaagccgcaagc
caggcccttcaggctgcgaaagatcaccatcttcagcagctacaggcctggcagcagcag
cagcaggccgaacagctggcgcagcagtcgctgaccagcctgctacaggcgctggatgtg
ctgcaacagcgtcagcagcaggaacagcaggcctgggagcagttgcagagccgtctggag
cagcagttcagcgcacaccatcttgccctgcccgctgccgccgatcgcgctgcgtggctg
gcggagcaacagcggcgctggcagcgctggcaggagagtgagcagttgcttgctaacctg
cagccacagctgttgaaaggggaaacccagctcactgccctgcagcagcaggctgaacag
gaacagcagcagctcacgactcgtcagcagcagcagcagcagagccaggcgcagctcagc
gaaatgcgtcagcagcgtctggcgctgtttggcgatcgcgaggtcaccctcgcccgtcag
cagctgcaggcccgcgttcagcacgccgatgaacagctggcacagcagctcaccgccctg
caacaggcgcaggccgaggtcagtcgcctgcagggtgagctggcggggctggaaaatcag
cgtcagactctcagcagcaaactggcagaggcggaaagcacactgcagcagtcactggcg
cgcgccggatttgccgatgaagccagcctgcgcgcggcgctgctggatgagcagagtgcg
ctgcaactgcgccagcagctgcagcagctcgatcagcagtaccagcagcagcaggcgcga
cgggcggatctgcgtcagcggctcagcgcccatcagcaggcaaagcccgacgcgatgccg
gaatctgcggaagcgctggcgcagcagctggagcagttacggctggcgctgcgcgacaac
gccagccagcagggtcagattcagcagcagctgcacagcgacgccagcctgcgtgcccgg
cagcagagtctgatgacacagatagaacaggatggggtggcgctggcgcagtggagcctg
ctcaacgacctgatcggctccgccagcggcgataaattccggcgtttcgcccagggcctg
acgctggatcatctggtcgcgctcgctaaccgtcagctcgaccggctacacggccgctat
ctgctgcagcggcgggcgcaggatcagctggagctggatgtggttgacacctggcaggct
gacgccgcgcgcgatacccgcaccctgtcgggcggggagagcttcctggtcagtctggcg
ctggccctggcgttatccgatctggtgagccacaaaacgcgcatcgaatcgctgtttctg
gatgaaggattcggcacgctggatgcccagacgctcgacaccgcgctggatgccctggat
gcgctcaacgccagcggcaaaaccatcggggtgatcagccacgttgaggcgatgaaggag
cgtatcccggtgcagattaaagtgcgcaagatgaacgggctgggatacagccagctggag
ctgccccagggataa
DBGET
integrated database retrieval system