Pantoea anthophila: OJ965_17440
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Entry
OJ965_17440 CDS
T08866
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
pano
Pantoea anthophila
Pathway
pano03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pano00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OJ965_17440 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pano03019
]
OJ965_17440 (pcnB)
Enzymes [BR:
pano01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
OJ965_17440 (pcnB)
Messenger RNA biogenesis [BR:
pano03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
OJ965_17440 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_arg_C
PolyA_pol_RNAbd
TOR1L1_N
Motif
Other DBs
NCBI-ProteinID:
UZH04842
LinkDB
All DBs
Position
3179538..3180956
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AA seq
472 aa
AA seq
DB search
MFTRVANFCRKVLKRDEEEAPAEVEPERLMTIIPRESHTISRKDISENALKVLYRLNKAG
YEAYLVGGGVRDLLLGQKPKDFDVTTNATPEQMRKLFRNCRLVGRRFRLAHVMFGPEVIE
VATFRGHHQAEEMAEDRNSSQRAQSGMLLRDNIFGSIEDDAQRRDLTINSLYYSVADFTV
RDYVGGISDLEQGIIRLIGDPETRYREDPVRMLRVARFAAKLNMRIAPETAEPIPRLASL
LRDIPPARLFEESLKLLQAGYGYSTYLKLCEYQLFQPLFPTLARNFTENSDSHMERMLAQ
VLKNTDNRIQNDMRVNPAFLFAAMFWYPQLEAAERIAQESGLTYFEAFAMAMNDTLDEAC
RALAIPKRITSLIRDIWLLQLRMSRRHGKRAWKLMEHPKFRAAYDLLALRAEVENNPELL
RLSQWWGEFQVAAPPQQKNMLNNLGDDPVPRHKSRRPRRRSSAPRRDNQNAS
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atttttacccgagtagctaatttttgccggaaagtcctgaagcgtgatgaagaggaagcc
ccagcagaggttgaaccagagcgtcttatgaccatcattcctcgtgaaagccataccatc
tcacgtaaagacatcagcgaaaatgccctcaaagtgctctatcgcctcaataaagccggt
tatgaagcctatctggtaggcggtggcgtgcgcgatttgctactggggcaaaaaccgaaa
gatttcgacgtgacgaccaacgccacacctgagcagatgcgcaagctgttccgcaactgc
cgtctggtcggtcgccgtttccgtctggcacacgtgatgtttggcccggaagtgatcgaa
gttgccaccttccgtggacatcatcaggcggaagagatggccgaggatcgcaacagttcg
cagcgcgcccagagcggcatgctgctgcgcgacaacattttcggttcgattgaagatgat
gctcagcgccgcgatctcaccatcaacagcctctactacagcgtggcggatttcaccgtg
cgtgactacgtgggcggcatcagcgatctggaacagggcatcatccgcctgattggcgat
ccggaaacccgttaccgcgaagacccggtccgcatgctgcgcgtggcgcgctttgctgcg
aagcttaatatgcgcattgcgccggaaacggcagagccgatcccgcgtctggcctcgctg
ctgcgtgatattccaccggctcgcctgtttgaagagtcgctgaagctgcttcaggcgggc
tacggctacagcacctatctgaagctctgtgaatatcagctgttccagccgctgttcccg
acgctggcgcgcaacttcacggaaaacagcgacagccacatggagcgcatgctggcgcag
gtgctgaaaaacaccgataaccgcattcagaatgatatgcgcgtgaatccggcgtttctg
tttgccgcgatgttctggtatccgcagctggaagcggcagagcgcattgcgcaggaaagt
ggcctgacctactttgaagcctttgcgatggcgatgaatgatacgctggatgaagcctgc
cgtgcgctggcgattccgaagcgcatcacctcgctgatccgcgatatctggctgctgcag
ctacgtatgtcgcgccgtcacggtaaacgcgcctggaaactgatggagcatccgaaattc
cgcgccgcttacgatctgctggcgctgcgggcggaagtggaaaataacccggaactgctg
cgtctgagccagtggtggggcgaattccaggtcgccgcgccgccgcagcagaaaaacatg
ctgaacaacctcggcgacgatccggtgccgcgccataaatcgcgtcgtccgcgccgccgt
tcttccgcgccgcgtcgtgacaaccagaacgcctcatga
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