Pantoea anthophila: OJ965_18715
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Entry
OJ965_18715 CDS
T08866
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pano
Pantoea anthophila
Pathway
pano03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pano00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OJ965_18715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pano03019
]
OJ965_18715
03009 Ribosome biogenesis [BR:
pano03009
]
OJ965_18715
Enzymes [BR:
pano01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OJ965_18715
Messenger RNA biogenesis [BR:
pano03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OJ965_18715
Ribosome biogenesis [BR:
pano03009
]
Prokaryotic type
rRNA helicases
OJ965_18715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_C
CMS1
Cas3-like_C_2
DRTGG
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UZH02682
LinkDB
All DBs
Position
complement(3471882..3473774)
Genome browser
AA seq
630 aa
AA seq
DB search
MTDIQTTFADLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAF
SLPLLNNIDPSVKAPQILVLAPTRELAVQVAEAVTEFSKHMRGLNVVALYGGQRYDVQLR
ALRQGPQVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITKRFMKDPQEVRIQSSLTTRPDISQSYWTAYGRKTDALVRFLE
AEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIA
TDVAARGLDVERISLVVNYDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIE
RTMKLTIPEVELPNAELLGQRRLAKFAAKVQQQLESSDLDQYRALLTKMQPEDELDLETL
AAALLKMAQGERPLILPPEAPRPPRREYRDRDDRDGRRDSREARGPRDSRDGDRPRRERR
DVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGNHSTIELPKGMPGDV
LQHFTRTRILNKPMNMQLLGDAQPNEGRGDRRPAGGDRRNGPGAGNREGGRRFSSERRDG
GREGGRSFNREGGRGPRREDGAAAPRRRDA
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgactgatattcaaaccacttttgctgaccttggcctgaacgccgacatccttgaatca
ctgaatggcatgggctacgtaaagccttccccaatccaggctgagtgtattcctcacctg
ctggcgggccgtgacgtgttaggtatggcgcagaccgggagtggtaaaactgcggcgttc
tctctgccgctgttaaacaacattgacccttctgtaaaagcacctcagatcctggtgctg
gcaccgacccgcgagctggcggttcaggttgctgaagctgtcaccgaattctctaaacac
atgcgtggcctgaacgtggttgccctgtacggcggccagcgttatgacgtgcagctgcgt
gcactgcgtcagggaccacaggttgttgtgggtacgcctggccgtctgctggaccacctg
aaacgcggcacgttagacctttctaacctgcgcggcctggtgctggacgaagcggacgaa
atgctgcgtatgggcttcatcgaagacgttgaaaccatcatggcgcagatcccggaaggt
catcagaccgctctgttctctgccaccatgccagaagcgattcgtcgcatcacgaaacgc
ttcatgaaagatccacaggaagtgcgtattcagtcaagcctgaccacgcgtcctgacatc
agccagagctactggaccgcttacggtcgtaaaactgacgcactggttcgcttcctggaa
gcggaagattttgatgcggcgattatcttcgtacgtaccaaaaacgcgaccctggaagtt
gcagaagcgctggagcgcagtggctacaacagcgccgcgctgaacggtgacatgaaccag
gcactgcgtgagcagacgctggagcgcctgaaagatggtcgtctcgacatcctgattgcg
actgacgttgcggcccgtggcctggacgttgagcgtatcagcctggttgttaactacgac
atcccgatggatgcagaatcttacgttcaccgtatcggccgtaccggtcgtgccggtcgt
gctggccgcgcgctgctgttcgtcgagaaccgcgagcgtcgtctgctgcgcaacatcgaa
cgtacaatgaagctgactattccggaagttgaactgccaaacgcagaactgctgggtcag
cgtcgtctggcgaagtttgccgcgaaagttcagcagcagctggaaagcagcgatctggat
cagtaccgtgctctgctgactaagatgcagccagaagacgaactggatctggaaacgctg
gccgcggcactgctgaagatggcacagggcgaacgtcctctgattctgccaccggaagcg
ccacgtccgccacgtcgtgaataccgcgatcgtgacgatcgtgatggccgtcgtgacagc
cgcgaagcgcgtggtccacgtgacagccgcgatggcgaccgtccacgtcgcgaacgtcgt
gacgttggcgagatgcagctctaccgcatcgaagtgggtcgcgatgatggtgttgaagtt
cgtcacatcgttggcgcgatcgctaacgaaggcgacatcagcagccgttacatcggtaac
atcaagctgttcggtaaccactcgactatcgagctgccgaaaggcatgccaggcgatgtg
ctgcagcacttcacccgtacacgtattctgaacaagccgatgaatatgcagttactgggt
gatgctcagccaaacgaaggtcgtggtgaccgtcgtccggccggtggcgatcgtcgcaat
ggcccaggcgctggcaaccgtgaaggtggccgtcgcttctcttctgagcgccgtgacggt
ggtcgtgaaggcggtcgcagctttaaccgcgaaggcggccgtggtccacgtcgtgaagat
ggcgcagccgcaccacgtcgtcgtgacgcataa
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