Pantoea anthophila: OJ965_20220
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Entry
OJ965_20220 CDS
T08866
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
pano
Pantoea anthophila
Pathway
pano03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pano00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OJ965_20220 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pano03019
]
OJ965_20220 (rhlB)
Enzymes [BR:
pano01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OJ965_20220 (rhlB)
Messenger RNA biogenesis [BR:
pano03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OJ965_20220 (rhlB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
UZH02953
LinkDB
All DBs
Position
3802377..3803669
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AA seq
430 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPKVVEALDSKGFQYCTPIQALALPFTLSGRDVAGQAQTGTGKT
MAFLTSTFHHLLSYPAAEGRQVNQPRALILAPTRELAVQIHADAEPLTASTGLKLGLAYG
GDGYDKQLKVLEQGVDILVATTGRLIDYAKQNHVNLGAIQVMVLDEADRMFDLGFIKDIR
WLFRRMPPATQRLSMLFSATLSYRVRELAFEHMNSAEYVEVEPEQKTGHRIQEELFYPSN
EEKMRLLQTLLEEEWPDRAIVFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILD
DFTKGDVDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA
CEEYALNLPSIEEYIGHSIPVSKYSSEALLTDLPPPKRLQRSRSGNGPRRGGNNANRRGA
PRNNNRKRSG
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacacttaactgaacagaagttttccgacttcgccctgcaccctaaagtg
gttgaagcccttgatagtaaaggctttcaatactgcacgccgattcaggcgttagctctg
ccttttacgctttcagggcgtgatgttgcaggccaggcgcaaaccggtaccggcaaaacg
atggcgtttctgacgtcaacgtttcatcatcttctctcttatcctgcggcggaaggtcgt
caggttaatcagccacgggcacttattcttgcgccaacgcgtgaacttgctgtgcagatt
catgcagatgccgaaccccttaccgcctcaaccggcctgaaactgggtctcgcctatggc
ggagacggttatgataaacagctgaaagtgctggaacagggcgtagatattctggtggcc
accaccggtcgcctgatcgactacgcgaagcagaatcacgttaacctcggtgccatccag
gtcatggtgctggacgaagccgatcgcatgttcgatctcggctttattaaagatattcgc
tggctgttccgccgtatgccgcctgccacccagcgcctgagcatgctgttctcagcaacg
ctctcttatcgcgttcgtgaactggcgttcgagcacatgaacagcgcggaatatgttgaa
gtggaaccggagcagaaaaccggccatcgcatccaggaagagcttttctatccgtctaac
gaagagaaaatgcgcctgctgcagaccctgctggaagaagagtggccggatcgcgccatt
gtcttcgcaaacaccaagcaccgctgtgaagatatctggggccacctggccgctgatggt
caccgcgttggcctgctgaccggcgatgtggcacagaagaagcgcctgcgcattcttgat
gacttcaccaaaggggacgtggatattctggtcgcgactgacgttgctgcccgtggtctg
cacatcccggcggtcacccacgtctttaactacgatctgcctgatgactgtgaagattac
gttcaccgcattggccgtaccggtcgtgcaggtgccagcggacactctatcagcctggcc
tgtgaagagtacgcgctgaatctgccgtcgattgaagagtacattggtcacagcattccg
gtcagtaagtacagcagcgaagccctgctaaccgatttaccgccgcctaagcgtctgcag
cgcagccgttccggcaatggcccacgccgtggaggcaataacgctaaccgtcgcggtgcg
ccacgcaacaacaaccgtaaacgttcaggttag
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