Pantoea sp. PSNIH2: PSNIH2_00005
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Entry
PSNIH2_00005 CDS
T03514
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
panp
Pantoea sp. PSNIH2
Pathway
panp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
panp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PSNIH2_00005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
panp03400
]
PSNIH2_00005
DNA repair and recombination proteins [BR:
panp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PSNIH2_00005
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PSNIH2_00005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
RsgA_GTPase
DnaJ_CXXCXGXG
AAA_25
NACHT
Viral_helicase1
AAA_23
nSTAND3
T2SSE
cobW
ScfRs
ExoX-like_C
Motif
Other DBs
NCBI-ProteinID:
AIX72316
LinkDB
All DBs
Position
complement(436..3267)
Genome browser
AA seq
943 aa
AA seq
DB search
MDKIEVRGARTHNLKNINLIIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRC
PDHDVPLAAQTVSQMVDNVLAQPEGARLMLLAPVVKDRKGEHTKTLENLATQGYIRARID
GEVCDLSDPPKLELQKKHTIEVVIDRFKVREDLATRLAESFETALELSGGTAIVADMDDA
NAEELLFSANFACPICGYSMSELEPRLFSFNNPAGACPTCDGLGVQQYFDPERVVQNAEL
SLAGGAIRGWDRRNFYYFQMLRSLADHLKFDIEAPFNSLSEKVRQVILYGSGKESIEFKY
INDRGDTSVRRHPFEGVLHNMERRYKETESSAVREDLAKFISNRACATCEGTRLRREARH
VYVENTTLPTISDMSIGHAMDFFRNLKLSGQRAKIAEKVLKEIGDRLSFLVNVGLNYLSM
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLDTLIHLRDLGNT
VIVVEHDEDAIRAADHIIDIGPGAGVHGGQVVAEGTADEIMQVEESLTGQYLSGKRKIEV
PEQRVPADPNKVLKITGARGNNLKDVTLTLPVGLFTCVTGVSGSGKSTLINDTLFPIAQR
QLNGATIAEAAPYRDVSGMEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGVPE
SRSRGYNPGRFSFNVRGGRCEACQGDGVLRVEMHFLPDIYVPCDQCKGKRYNRETLEIKY
KGKSIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKL
ARELSKRGTGQTLYILDEPTTGLHFADIQLLLTVLHQLRDQGNTIVVIEHNLDVVKTADW
IVDLGPEGGSGGGQILVAGTPETVAKCKESHTARFLKPLLEQR
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggataagatcgaagtccggggtgcccgcacccacaacctgaaaaacatcaacctgatc
atccctcgcgacaaactgatcgttgtcaccggcctgtcaggttccggtaagtcctcgctg
gcgttcgatacgctctacgccgaaggacagcgccgctatgtggaatccctttccgcctat
gcgcgtcagtttctttcgctgatggaaaaaccggatgtcgatcatatcgaagggctatcg
cctgcgatttcgatcgagcagaaatcaacgtcccataacccgcgttcaacggtcgggacc
attactgaaattcatgactatctgcgtctgctgttcgcccgcgtgggcgagccgcgctgt
cccgaccatgacgtgccgctggcggcgcaaaccgtgagccaaatggtcgacaacgtgctg
gcgcagccggaaggcgcgcgcctgatgctgctggcgccggtggtgaaagatcgcaaaggc
gaacacaccaagacgctggagaacctggcgacgcagggctatatccgcgcccgcatcgac
ggcgaagtgtgcgatctttccgatccgccgaagctggagctgcaaaagaaacacaccatc
gaagtggttatcgatcgctttaaggtgcgcgaggatctggcgacgcgtctggcggaatcg
ttcgagaccgcgctggagctttccggcggcacggcgatcgtggcggatatggatgatgcc
aatgcggaagaactgctgttctccgccaacttcgcctgtccgatctgcggttacagcatg
agcgagctggagccgcgcctcttctcgttcaacaacccggccggcgcctgcccgacctgc
gacggcctgggcgtgcagcaatatttcgatcctgagcgcgtggtgcagaacgccgagctg
tcgctggcgggcggcgcgattcgcggctgggatcgtcgcaacttctactatttccagatg
ctgcgctcgctggcggatcatctgaaattcgatatcgaagcgccgttcaacagcctgagc
gaaaaagtgcgccaggtgatcctgtatggatccggcaaagagagcatcgaatttaaatat
atcaacgatcgcggcgacacctcggtacgtcgacatccgtttgagggcgtgctgcacaat
atggagcgccgctacaaagagacggaatcgagcgcggtgcgcgaagatctggcgaagttc
atcagcaaccgcgcctgcgctacctgcgaagggacgcgcctgcgccgcgaagcgcgtcat
gtttatgtggaaaacaccacgctgccgaccatctctgatatgagcatcggtcacgcgatg
gactttttccgcaacctgaagctgagcggccagcgcgccaaaatcgccgagaaagtgctg
aaagagatcggcgatcgcctgagcttcctggtcaatgtcggcctgaactacctttccatg
tcgcgttcggcggaaacgctctccggcggcgaggcgcagcgcatccgtctggcgagccag
atcggggccggtctggtaggcgtgatgtacgtgctggatgagccctctatcggcctgcac
cagcgcgataacgagcgcctgctcgatacgctgattcacctgcgcgacctgggcaacacg
gtgatcgtggtggaacatgacgaggatgcgattcgcgccgccgatcatattatcgatatc
ggccctggcgcgggcgtgcacggcggtcaggtcgtggcggaaggcaccgccgacgagatt
atgcaggtggaggaatcgctgaccggccaatatctgagcggcaagcgaaaaatcgaagtg
ccggaacagcgcgtgcccgccgatccgaacaaggtgctgaagattaccggcgcgcgcggc
aacaacctgaaggatgtgacgctgacgctgccggtcggcctgtttacctgcgtgaccggc
gtctccggctccggtaaatcgaccctgatcaacgacacgctgttcccgatcgcgcagcgc
cagctgaacggcgcgaccatcgcggaagcggcgccttaccgcgacgtcagcggcatggag
catttcgataaagttatcgatatcgatcagagcccgattggtcgtacgccgcgctccaac
ccggcgacctacacgggcatcttcacgccgatccgcgaactgttcgccggcgtgccggaa
tcccgttcgcgcggctataacccaggccgcttcagctttaacgtgcgcggcggacgctgc
gaagcctgtcagggcgacggcgtgctgcgcgtggagatgcacttcctgccggatatctat
gtgccgtgcgaccagtgcaaaggcaagcgctataaccgcgaaacgcttgagattaaatac
aaaggcaagagcatccacgaagtgctggatatgaccatcgaagaggcgcgcgagttcttc
gacgcggtgccagcgctggcgcgtaagctccagacgctgatggacgtggggctttcctat
attcgtctcggtcagtccgccactacgctgtccggcggcgaggcgcagcgcgtgaagctg
gcgcgcgagctgtcgaagcgcggcaccggtcagacgctctatatccttgatgaaccgacc
accggtttgcacttcgcggatatccagctgctgctgacggtgctccatcagctgcgcgat
cagggcaataccatcgtggtgattgagcataacctcgacgtggtgaaaactgccgactgg
attgtcgatctggggccggaaggcggcagcggcggcggtcagattctggtggcaggcacg
ccggaaaccgtggcgaagtgcaaagagtcgcataccgcgcgtttcctgaagccgctgctg
gaacaacgctaa
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