Pantoea sp. PSNIH2: PSNIH2_00575
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Entry
PSNIH2_00575 CDS
T03514
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
panp
Pantoea sp. PSNIH2
Pathway
panp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
panp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSNIH2_00575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
panp03019
]
PSNIH2_00575
03016 Transfer RNA biogenesis [BR:
panp03016
]
PSNIH2_00575
Enzymes [BR:
panp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PSNIH2_00575
Messenger RNA biogenesis [BR:
panp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PSNIH2_00575
Transfer RNA biogenesis [BR:
panp03016
]
Prokaryotic type
tRNA degradation factors
PSNIH2_00575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
WHD_RNase_R
Rho_RNA_bind
RNase_II_C_S1
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
AIX72411
LinkDB
All DBs
Position
129249..131684
Genome browser
AA seq
811 aa
AA seq
DB search
MSKDPFQEREAEKYENPIPSREFILAHLEKREKPASREDLAAEMNIEGEEQLEALRRRLR
AMERDGQLVFTRRQCYVLPERLDLLRGKVIGHRDGYGFLRVEGQKDDFYLSAEQMKFCMH
GDIILAQPQGADRKGRREARVVRVLEPRNSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP
EEIMSARMGSVVVVELVQRSTRRTKAIGKITEVLGDDMGTGLAVDMALRTHEIPHVWPAE
VESQVSTLREEVPEEAKQGRVDLRQLPLVTIDGEDARDFDDAVYCQKKRGGGWRLWVAIA
DVSYYVRPGTPLDNEAHNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS
ASGKLTGYKHYEAVMNSHARLTYNKVWAILQGNPELREQYAPLVKDLEELHSMYQVLEKA
REQRGGISFETEEAKFIFNAERRIERVERTVRNDAHKLIEECMILANIASARFVEKHQEP
ALFRDHDRPSDDSIKSFRSVLAELGLSLPGGNKPQPLDYAELLETIADRPDHEMLQTMLL
RSMKQAVYDPENRGHFGLALSSYAHFTSPIRRYPDLLLHRAIKYLLAQQAGTLEGNSTPT
GGFHYDMQQMLQLGLHCSMTERRADEATRDVADWLKCDFMQDQVGNTFTGIIASVTSFGF
FVRLNDLFIDGLVHVSTLDNDYYRFDAVGQRLIGESGGRTYRLGDTVEVRVEAVHMDERK
IDFALISSQRRPRGEGKTEREKAKKGGAGAHNKRRREMRKNANFEPNEAFRGEGKKAAKP
KSEKKAKKPSDKTRKIAAATKAKRAAKKKEA
NT seq
2436 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaagacccttttcaggaaagagaagctgaaaaatacgaaaacccgattcccagt
cgcgagtttattctcgcgcatttagaaaaacgtgaaaaaccggccagccgcgaagatctg
gcggccgaaatgaatatcgaaggcgaagagcagctggaagcgctgcgtcgccgtctacgc
gccatggagcgcgacggacagctggtttttacccgtcgccagtgctacgtcctgcctgaa
cgtctcgatttgctgcgcggcaaggtgattggccaccgcgacggctacggattcctgcgc
gttgaaggacagaaagacgatttctacctctccgccgagcagatgaaattctgcatgcac
ggcgacattattctggctcagccgcagggcgccgaccgtaagggacgccgcgaggcgcgc
gtagtgcgcgtgctggagccgcgcaacagccagatcgttggccgttatttcaccgaagcc
ggcgtcggctttgtggtgccggacgacagtcgtctgagcttcgatattctgatcccgccg
gaagagatcatgagtgcgcgtatgggctccgtcgtggtcgtcgagctggtgcagcgttca
acgcgccgcaccaaggcgatcggtaagattaccgaagtgttgggcgacgatatgggcacc
ggcctggcggtcgatatggcgctgcgtacccatgaaatcccacacgtctggccagcggaa
gttgaatctcaggtctccacgctgcgcgaagaggtgccggaagaggcgaagcaggggcgc
gtcgatttgcgtcagctgccgctggtcaccatcgatggcgaagatgcgcgcgactttgat
gacgccgtttactgccagaaaaaacgcggcggcggctggcgcctgtgggtcgccatcgcc
gacgtcagctactacgtgcgtcccggcacgccgctggataacgaagcgcataaccgcggc
acctcggtctatttcccgtcgcaggtggtgccgatgctgcctgaagtgctttccaacggt
ctctgctcgctgaatccgcaggtcgatcgcctctgcatggtgtgcgaaatgaccgtttcg
gccagcggcaagctgaccggctataagcactatgaagcagtgatgaactcccatgcgcgc
ctgacctacaataaggtgtgggcgattctgcagggcaacccggaactgcgcgagcaatat
gcgccgctggtgaaggatttggaagagctgcacagcatgtatcaggtgctggagaaagcg
cgtgagcagcgcggcggcatctcgtttgaaaccgaagaagccaaattcatcttcaacgct
gagcgccgtattgagcgcgtagagcgtacggtgcgtaacgatgcgcacaagctgattgaa
gagtgtatgattctggcgaacatcgcctcggcgcgctttgttgagaagcatcaggagccg
gcgctgttccgcgatcacgatcgtcccagcgacgacagcatcaaaagcttccgttccgtg
ctggccgagctgggcctgtcgctgccgggcggcaataaaccgcagccgttggattatgcc
gagctgctggaaaccatcgccgatcgtcccgatcacgaaatgctgcaaacgatgctgctg
cgttcaatgaagcaggcggtctacgacccggaaaaccgtggtcactttggcctggcgctg
tcgtcctatgcgcattttacctcgccgatccgccgctatcccgatctgctgctgcatcga
gcgatcaaatatctgctggcgcagcaggcgggcacgctggaaggcaacagcacgccgacc
ggcggtttccattacgatatgcagcagatgctgcagctgggcctgcactgttcaatgacc
gaacgccgcgccgatgaagcgacgcgcgacgtggcggactggctgaagtgcgactttatg
caggatcaggtcggcaatacctttaccggcatcatcgccagcgttaccagcttcggcttc
tttgtgcgcctgaacgatctgtttatcgacgggctggtgcatgtctctacgctggacaac
gactactaccgtttcgacgccgtcggacagcgtttaattggcgaatcgggcggccgcacc
tatcgtcttggcgataccgttgaagtgcgcgtggaagcggtgcatatggatgagcgcaaa
atcgatttcgccctgatctccagccagcgtcgtccgcgcggcgaaggtaaaaccgagcgt
gaaaaggcgaaaaaaggcggcgccggcgcccataacaaacgccgtcgcgagatgcgtaaa
aacgccaacttcgaaccgaacgaagcgttccgcggcgaaggaaaaaaagccgctaagccg
aaaagcgagaaaaaagcgaaaaaaccttcggataaaacccgtaaaatcgccgccgcgacc
aaagcgaagcgcgcagcgaagaaaaaagaggcatag
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