Pantoea sp. PSNIH2: PSNIH2_12900
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Entry
PSNIH2_12900 CDS
T03514
Name
(GenBank) ATP-dependent dsDNA exonuclease
KO
K03546
DNA repair protein SbcC/Rad50
Organism
panp
Pantoea sp. PSNIH2
Brite
KEGG Orthology (KO) [BR:
panp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
panp03400
]
PSNIH2_12900
DNA repair and recombination proteins [BR:
panp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PSNIH2_12900
Archaeal homologous recombinant proteins
PSNIH2_12900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcC_Walker_B
SMC_N
AAA_29
ABC_tran
nSTAND3
cobW
AAA_21
ABC_ATPase
NTPase_1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AIX74582
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All DBs
Position
2786051..2789728
Genome browser
AA seq
1225 aa
AA seq
DB search
MKILSLRFKNINSLKGEWKIDFTREPFASSGLFAITGPTGAGKTTLLDAICLALYHETSR
LGKISQTQNELISRDTAECLAEVEFEVKGEAWRAFWSQNRARGAVDGNLQAPRVELARCA
DNVIVADKVKDKLEMIAQLTGLDFARFTKSMMLSQGQFAAFLNADANDRAELLEELTGTE
IYGQLSARIYEQHKQARIELDQLRARAAGMALLEPAARQELEQALGALTQQEQELQKQLA
LTQQQHQWLSQQQRLTQETEQAADAQRQAESDWQQAEPARQQLARAEPAEKLRPLWQQRS
QLQQDLQQLAQQTQQLTAALKLESEQLLTMQQAQLLAEQENKRLNDQWRQQETLINDQVI
PLDHQIATLTQQLTLQQQNLEESQRTQQQREQRRRQLSDERQTLLSQQQQEQQWRRDHAG
VADWGERLGGWRERFQQQQQLRQNLTAMQEKQRQHQQQLNEQQQLSDRLASASTPLESEL
ERARQHAAQAEQALTALEEQQPESALRRQLEQQQRQRPLRQKLAICFSTLRPLSQRHTQQ
QQELLALDELIVQQTQQLEQRRQAWKEKHQHRIDLQKRLELEQRIVSLEQERARLIAGEP
CPLCGATEHPAVAHYQTLTLNENQQRLENVRQQEEQLRIEGVTCGEQLKALQSQQQRLMQ
QQQTLSAELTRQQDEWHTLLAAAELTLAPEDEAGLSAWIEQQERQESELQAQLQQREGAA
RLYQQAKEALAACQQRWQQQHQARQLAEQQLGYLRQQRQEAEQQQRQLSEQLALLDEALT
QELTQHQLTLPEPQAQQAWLEDRQEAWRRWQKSEQLLADIAARLAACDTALRGIDDELTQ
LAQQRERAEQLAQSQRRKLSELRQQRHQLLGDSAVSEVRQQWQQRLAQADALLRERQQRW
QQGQDRLNNLTGQHNSLAQQQEVAQKRYETCSAQFIDALTQSDFSDEEAFRAALLDEQQA
MQLRTRCQALEARRQQANAVAQQAQARLTQHLADRPADLSAALPELEARLEAQQQRLRDL
VRQQGQLRQQLESDDAQRQQQQALLQRIEDNAQQTEDWGYLNQLIGSSSGDKFRRFAQGL
TLDHLVWLANQQLNRLHGRYLLQRKSADTLELQVMDTWQADAKRDTRTLSGGESFLVSLA
LALALSDLVSHKTRIESLFLDEGFGTLDADTLDTALDALDALNASGKTIGVISHVDAMKE
RIPVQIKVRKVNGLGYSRLDRLFSV
NT seq
3678 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcctttcgctgcgctttaaaaatatcaactcgctgaagggcgaatggaaaatc
gacttcacccgcgaaccgttcgccagcagcggcctgttcgccattaccggccccaccggc
gccggtaaaaccaccctgctcgacgccatctgcctggcgctctatcacgaaacctcgcgg
ctgggcaaaatctcgcaaacgcagaacgagctgatcagccgcgataccgctgaatgtctg
gccgaggtggaatttgaggtcaaaggcgaagcctggcgcgccttctggagtcagaaccgg
gcgcgcggcgcggtggacggcaacctgcaggcgccgcgcgtcgagctggcgcgctgcgcg
gacaatgttatcgtcgccgacaaggttaaagataagctggagatgatcgcccagctaacc
ggactcgactttgcccgcttcaccaaatcgatgatgctgtcgcaggggcagttcgccgcg
tttctcaacgccgacgccaacgaccgcgccgaactgctggaggagctgaccggcaccgag
atctacggccagctttccgcgcgcatctatgaacagcacaagcaggcgcgcatcgagctg
gaccagttgcgcgcgcgggcggcgggcatggcgctgctggagccggcggcgcgtcaggaa
cttgagcaggcattaggcgcactgacgcagcaggaacaagagctgcaaaaacagttagcg
cttactcagcagcaacaccagtggctcagccagcagcagcgtctgactcaggaaacggag
caggccgccgacgctcagcgtcaggcggaaagcgactggcaacaggcggaaccggcgcgt
cagcagctggcgcgggcggaaccggcggaaaagctgcgtccgctctggcaacagcgcagc
cagctacagcaggatctgcaacagctggcgcagcaaacgcagcagctgactgccgcgctc
aaactcgaaagcgagcagttacttacaatgcaacaggcgcagttgctggccgaacaggag
aataaacggctcaacgaccagtggcgtcagcaggaaacgctgatcaacgaccaggtgatc
ccgctcgaccatcagatcgctaccctgacgcagcagctgacgctgcaacaacagaatctg
gaggaaagccagcgcacgcagcagcagcgcgagcagcgccgacgccagctcagcgacgaa
cggcagacgctgctttcgcagcagcagcaagagcaacagtggcgccgcgaccatgccgga
gtggcggactggggcgagcggctgggcggctggcgcgagcgttttcagcagcagcaacag
ctgcgacagaacctgacggcgatgcaggaaaaacagcgccagcatcagcagcagctgaat
gaacagcagcagctgtccgatcgactcgcttcagcgtcgacgccgctggaaagcgagctt
gaacgcgcgcgtcagcacgcggcacaggctgagcaagcgcttactgcgttagaagagcag
cagccggaaagcgcgctgcgccgtcagctggagcaacagcagcggcagcgaccgctacgg
caaaagctggcgatctgcttttccaccctgcgccctctcagccagcgtcatacgcaacag
cagcaggagctgctggcgctggatgaactaatcgtgcagcaaacgcagcagctggaacag
cgtcgccaggcgtggaaagagaagcaccagcaccggatcgacctgcaaaagcgcctggag
ctggagcagcgcatcgtcagtctggagcaggagcgcgcccgcctgatcgccggcgagccc
tgtccgctctgcggcgccaccgagcatccggcggtggcgcactatcaaaccctgacgctg
aacgagaatcagcagcggctggagaacgtgcgccagcaggaagagcagctgcgcatcgaa
ggcgtcacctgcggcgagcagctgaaggcgttgcaaagccagcagcagcggctgatgcag
caacagcagacgctgagcgccgaactgacgcgccagcaggatgagtggcatacgctgctg
gccgccgccgaactgacgctggcgccggaagacgaagcgggactcagcgcctggatcgaa
cagcaggaacggcaggagagcgagcttcaggcgcagctgcaacagcgcgaaggcgccgca
cgcctttatcagcaggcgaaagaggcgctggcggcctgtcagcagcgctggcaacagcag
catcaggcgcgccagctggcggaacaacagctgggctatctgcgtcagcaacggcaggag
gcggaacagcagcagcggcagttaagcgaacagctggcgctgctggacgaagctctgacg
caggagctgacgcagcatcagctgacgctgccggagccgcaggcgcagcaggcctggctt
gaggatcgtcaggaggcgtggcggcgctggcagaaaagcgaacagctattggccgatatc
gccgcgcgccttgccgcctgcgacaccgcgctgcgcggcatcgatgacgaactgacgcag
ctggcgcaacagcgggaacgggcggaacagctggcgcagtcgcagcggcgaaagctgagc
gagctgcgtcaacagcgtcatcagctgctgggcgacagcgcggtgtcggaggtgcgtcaa
cagtggcagcagcggctggcccaggccgacgcccttctccgcgaacggcagcagcgctgg
cagcagggacaggatcggctaaataacctgaccggacagcataattctctggcacaacag
caggaggtggcgcagaaacgctatgaaacgtgcagtgcgcagtttatcgacgcgttaacg
cagagcgatttcagcgatgaagaagctttccgcgccgccctgctggatgaacagcaggcg
atgcagctacgcacccgctgtcaggcgctggaggcgcggcggcagcaggcgaacgcggtg
gcgcagcaggcgcaggcgcgactgacgcagcatcttgccgaccgtccggccgatcttagc
gccgcgctgccggagctggaggcacgactggaagcgcagcagcaacgactgcgtgacctt
gttcgtcagcaggggcagctgcgccagcagctggagagcgacgacgcgcagcgccagcag
cagcaggcgctgttgcagcgcattgaggataacgcgcagcagactgaagactggggctac
ctgaatcagctgatcggctccagcagcggcgataagttccgccgcttcgcccaggggctg
acgctcgatcacctggtctggctggcgaaccagcaactgaatcgcctgcacggacgctat
ctgctgcaacgcaaatccgccgatacgctggagttgcaggtcatggatacctggcaggct
gacgcgaagcgcgatacccgcaccctgtcgggcggcgaaagttttctggtaagcctggcg
ctggcgctggcgctttcggatctggtgagccataaaacccgtatcgaatcgctgttcctg
gatgagggcttcggcacgctcgatgcggatacgctcgataccgcgctggacgccctggac
gcgctgaacgccagcggcaaaactatcggcgtaatcagccatgtcgacgcgatgaaagag
cgtattccggtacagatcaaagtcaggaaggtgaatggtctgggctacagccgactggac
cggctattttcagtctga
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